1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactgcgagggtgagtagcaccttcaaaccggtcaaatcttctgagaggctgactcttacggtgtacagGATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTGACGGACTATAATCATCCTTGCCAGATCATGGCAGATGCTTTGACGATTA
species | Selaginella moellendorffii |
transcript | EFJ12071 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTCTCGGGCTATAACGATGTGATCATGGCTCGTCTTTTTGCTCATCAG GATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTGEST: gi|169104779|gb|FE509001.1|FE509001
genomic: TTCTCTCGGGCTATAACGACGTGATCATGGCTCGTCTTTTTGCTCATCAGgtactgcgag ... cggtgtacagGATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTG
EST: TTCTCTCGGGCTATAACGATGTGATCATGGCTCGTCTTTTTGCTCATCAG GATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTGEST: gi|169044842|gb|FE454131.1|FE454131
genomic: TTCTCTCGGGCTATAACGACGTGATCATGGCTCGTCTTTTTGCTCATCAGgtactgcgag ... cggtgtacagGATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTG
EST: TTCTCTCGGGCTATAACGACGTGATCATGGCTCGTCTTTTTGCTCATCAG GATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTGEST: gi|169075526|gb|FE482536.1|FE482536
genomic: TTCTCTCGGGCTATAACGACGTGATCATGGCTCGTCTTTTTGCTCATCAGgtactgcgag ... cggtgtacagGATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTG
EST: TTCTCTCGGGCTATAACGACGTGATCATGGCTCGTCTTTTTGCTCATCAG GATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTG
genomic: TTCTCTCGGGCTATAACGACGTGATCATGGCTCGTCTTTTTGCTCATCAGgtactgcgag ... cggtgtacagGATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTG
gtagcaccttcaaaccggtcaaatcttctgagaggctgactcttacggtgtacagGATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTGACGGACTATAATCATCCTTGCCAGATCATGGCAGATGCTTTGACGATTA
ctcttac putative branch site (score: 5)
ctcttac CT-rich tract
aaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgcgagggtgagtagcaccttcaaaccggtcaaatcttctgagaggctgactcttacggtgtacagGATCTATTGGACTTGGCGAAGTATGCTTCCATTCCCGTTATAAATGGTTTGACGGACTATAATCATCCTTGCCAGATCATGGCAGATGCTTTGACGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG