1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaccatctcctttcatctatgaagcggtttcgaaaactggtattggtgcaacagGTGCGTCAGGTTCTCAAACGAAGTTGCTGGCGTTCCCGACCTTGGAGTTCTTGGTCGCGGTGGAAGTGAGGAGATTGGAACGTACGTGGAGCGGTTGATG
species | Selaginella moellendorffii |
transcript | EFJ11043 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGGACCTCTAGTCAAAACGGTGATGACCCGCTGCATTCACTGCACAAG GTGCGTCAGGTTCTCAAACGAAGTTGCTGGCGTTCCCGACCTTGGAGTTCTEST: gi|169088391|gb|FE495437.1|FE495437
genomic: TTGGGACCTCTAGTCAAAACGGTGATGACCCGCTGCATTCACTGCACAAGgtaaccatct ... ggtgcaacagGTGCGTCAGGTTCTCAAACGAAGTTGCTGGCGTTCCCGACCTTGGAGTTCT
EST: TTGGGACCTCTAGTCAAAACGGTGATGACCCGCTGCATTCACTGCACAAG GTGCGTCAGGTTCTCAAACGAAGTTGCTGGCGTTCCCGACCTTGGAGTTCTEST: gi|169044666|gb|FE452460.1|FE452460
genomic: TTGGGACCTCTAGTCAAAACGGTGATGACCCGCTGCATTCACTGCACAAGgtaaccatct ... ggtgcaacagGTGCGTCAGGTTCTCAAACGAAGTTGCTGGCGTTCCCGACCTTGGAGTTCT
EST: TGACCCGCTGCATTCACTGCACAAG GTGCGTCAGGTTCTCAAACGAAGTTGCTGGCGTTCCCGACCTTGGAGTTCT
genomic: TGACCCGCTGCATTCACTGCACAAGgtaaccatct ... ggtgcaacagGTGCGTCAGGTTCTCAAACGAAGTTGCTGGCGTTCCCGACCTTGGAGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccatctcctttcatctatgaagcggtttcgaaaactggtattggtgcaacagGTGCGTCAGGTTCTCAAACGAAGTTGCTGGCGTTCCCGACCTTGGAGTTCTTGGTCGCGGTGGAAGTGAGGAGATTGGAACGTACGTGGAGCGGTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG