Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctccttcctttcttttctcatccttcttctctccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG

Basic information

species Selaginella moellendorffii
transcript EFJ10085
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ10085 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 3'ss of exon 3
-----------------------------------------------------gttttctccttcctttcttttctcatcctt------cttctctccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG
                                                     ||||           | ||| |||||  ||        ||  | |||||||| ||   ||||||||| ||||| || || |||||| | || |||||||||||||||||||| ||||| || |||
cgaattgtgtgttctcttttgggtcatttggttccaattggtttgatcgtttagtttgtgatgaatgctgtttcctcattgtttatggttgtcattgcagGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG

upper sequence: EFJ10085 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G095114_T01 (Zea mays), 3'ss of exon 3
------------------------------------------------------------------------------------------------------------------gttttctccttcctttcttttctcatccttctt-----ct----ctccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG
                                                                                                                  ||| | ||  || || || |  | |   ||  |     ||     | |||||||| |||  ||||||||| ||||| ||||| |||||  | || |||||||| ||||||||||| ||||| || |||
gtgaaaaatctggtgcccttgattcccattgtgataggttcttgttagcaaaagattagttaagtgcattgtttgattttgaggtgaatctgatagtaacattatggggtaccagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG

upper sequence: EFJ10085 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
--------------------------------------------------------------gttttctccttcctttcttttctcatcct----tcttctctccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG
                                                                | |||  | |   |    |  ||   |    |   |  | |||||||||||  | |||||| | |||||||||||||||||  | ||||| ||||| ||||| ||||| ||||| || |||
gtaacgatcttttttcactgttctccctgcattcactctcagatattgtcttctcatatgtgaatgtctgttacaacttaacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG

upper sequence: EFJ10085 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
-----------------------------------------------------------------gttttctccttcctttcttttctcatccttcttctctccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG
                                                                 |||| ||| |    ||| | | ||||||   ||   |  ||||||||||  |||||||||||||||| |||||||||||| | || || || || || |||||||| ||||| || |||
gtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaa-tgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG

upper sequence: EFJ10085 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------------------------------------------------gttttctccttcctttctt--ttctcatccttcttctc-tccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG
                                                                     |  ||| ||    ||| |  |    ||     ||    |  ||||||||||  |||||||||||||||| || ||||||||  | || || || || ||||||||  | || || ||||||
gtatggtatttctttcaatcaattatgtcttatttttctttaatttatttttataatgacttaaaatgatcatcttctgtgattcatggtcacaatgggaattaaaatgtagGATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttctccttcctttcttttctcatccttcttctctccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG
                            ttttctccttcctttc  CT-rich tract
                           tttctttt  TA-rich tract