1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttatattttttacatagttctagctagcttttaacactttggtactagctagtccatggctaatggttgattaacgttatagtgttctccattttccagTTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAGACAATTGCTCGGGGTTGCAAGGATTTTTGGTTTTCAATGCGGTGGGAGG
species | Selaginella moellendorffii |
transcript | EFJ09935 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAG TTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAGEST: gi|169050573|gb|FE459641.1|FE459641
genomic: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAGgtatgtgatc ... cattttccagTTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAG
EST: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAG TTGGAAGAGAGATTCTGGAACAGTGCTTGGACAGGATACGAAAGCTCGCAGEST: gi|169073536|gb|FE482652.1|FE482652
genomic: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAGgtatgtgatc ... cattttccagTTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAG
EST: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAG TTGGAAGAGAGATTCTGGAACAGTGCTTGGACAGGATACGAAAGCTCGCAGEST: gi|169101502|gb|FE501475.1|FE501475
genomic: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAGgtatgtgatc ... cattttccagTTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAG
EST: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAG TTGGAAGAGAGATTCTGGAACAGTGCTTGGACAGGATACGAAAGCTCGCAGEST: gi|169049012|gb|FE454972.1|FE454972
genomic: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAGgtatgtgatc ... cattttccagTTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAG
EST: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAG TTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAG
genomic: CTCTGGGAAGGAGGACGCAGCGAATAATTTCGCTCGAGGACACTACACAGgtatgtgatc ... cattttccagTTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAG
ctagctagtccatggctaatggttgattaacgttatagtgttctccattttccagTTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAGACAATTGCTCGGGGTTGCAAGGATTTTTGGTTTTCAATGCGGTGGGAGG
gattaac putative branch site (score: 13)
tgttctccattttcc putative PPT
ttgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatattttttacatagttctagctagcttttaacactttggtactagctagtccatggctaatggttgattaacgttatagtgttctccattttccagTTGGAAGAGAGATTCTGGAGCAGTGCCTAGACAGGATACGAAAGCTCGCAGACAATTGCTCGGGGTTGCAAGGATTTTTGGTTTTCAATGCGGTGGGAGG
- - -atttttt
- - - - - - - -tagttct
- - - - - - - - - - - - -tagcttt
- - - - - - - - - - - - - - - - - - -ctttggt
- - - - - - - - - - - - - - - - - - - - - - - -agctagt