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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtcaagttgctggtgacgagctggatctgatcatccttggctgttcttgtttgtagGTATCTCAACCAGGGGGACGAGCACGGCAGCGACTGGGTACCACCCGAGTGTGATGTTTCGATCCGGACGGGATGGTTCTGGCACCGGAGCGAGCGTCCG

Basic information

species Selaginella moellendorffii
transcript EFJ08766
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08766 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv16s0022g02170.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------gtaagttgtcaagttgctggtgacgagctg-gatctgatcatccttggctgt-tcttgtt-----tgtagGTATCTCAACCAGGGGGACGAGCACGGCAGCGACTGGGTACCACCCGAGTGTGATGTTTCGATCCGGACGGGATGGTTCTGGCACCGGAGCGAGCGTCCG
                               ||| || | || ||           |||  || || |       || || | |  || |     |  || || ||||||   || ||    || || |  || ||||| ||||| || ||||||||||| |||||| ||||||||||||||||      ||| |  || 
tttttttaaaataaaatattatgatatcttctaactttttaatttctgtactgtacgctaagacctaaatgcatatgactatgtgatgataatgatacagCTACCTCAACACTGGAGATCCTCAAGGGACGGATTGGGTGCCACCAGAATGTGATGTTTCAATCCGGCCGGGATGGTTCTGGCATGCATCCGAACAACCA

upper sequence: EFJ08766 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv16s0022g02170.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------gtaagttgtcaagt--tgctggtg-acgagctgga---tctga-tcatccttggctgttcttgtttgtagGTATCTCAACCAGGGGGACGAGCACGGCAGCGACTGGGTACCACCCGAGTGTGATGTTTCGATCCGGACGGGATGGTTCTGGCACCGGAGCGAGCGTCCG
                                | |    | |  |  | ||  ||  | | ||| |    || | | |    | | |  | ||| | | || ||| |||||   |||||   | | || |  |||||| | || || || || ||||||||||||||| ||||||||||||||||      | |    |||
aagctcattttatattcagaatgtgaaacacatgaaccattacttaattctaatgtgccacctgaagaccctaactaagaacttgttaattttgat-gcagTTATATCAACACCGGGGATCCGAAAGGGACGGACTGGCTGCCGCCGGAATGCGATGTTTCGATCCGGCCGGGATGGTTCTGGCATAAATCCCAAAAGCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagttgctggtgacgagctggatctgatcatccttggctgttcttgtttgtagGTATCTCAACCAGGGGGACGAGCACGGCAGCGACTGGGTACCACCCGAGTGTGATGTTTCGATCCGGACGGGATGGTTCTGGCACCGGAGCGAGCGTCCG
                       atctgat  putative branch site (score: 4)
                                          ttcttgttt  putative PPT