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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaagtttctcaattcgaccaatcagtagctcatcactcacgatctttttctttggcagAACTTGGTCGCGGCCGGAACTGAAACCTCAGCAGTGACGCTCGAGTGGGCGATGGCCGAGTCAATAAAAAACCCCACCATTGCCGCCAAAGCCCGAGAAG

Basic information

species Selaginella moellendorffii
transcript EFJ07631
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169059736|gb|FE468307.1|FE468307
EST:     ACGAGCGACTACAAAACAAAAATATCATAAGTGTTATGACA                         AACTTGGTCGCGGCCGGAACTGAAACCTCAGCAGTGACGCTCGAGTGGGCG
genomic: ACGAGCGACTACAAAACAAAAATATCATAAGTGTTATGACCgtaagaaaag ... tctttggcagAACTTGGTCGCGGCCGGAACTGAAACCTCAGCAGTGACGCTCGAGTGGGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctcaattcgaccaatcagtagctcatcactcacgatctttttctttggcagAACTTGGTCGCGGCCGGAACTGAAACCTCAGCAGTGACGCTCGAGTGGGCGATGGCCGAGTCAATAAAAAACCCCACCATTGCCGCCAAAGCCCGAGAAG
                              cactcac  putative branch site (score: 2)
                                    cgatctttttcttt  CT-rich tract
                                         tttttcttt  TA-rich tract