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gtaagttttttgcatacattttccttttcgcggctcacttacatgagtttcatttcagGCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAACAAGATGCGCAG
species | Selaginella moellendorffii |
transcript | EFJ06539 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATAAGAAGTATAACAAGGATTGTGCCGAGGAAGTCTTGAAGTCGTTGC GCTTGCCGATTGATAAAGTGCAGAAATGCATGGGEST: gi|169096824|gb|FE499840.1|FE499840
genomic: GGATAAGAAGTATAACAAGGATTGTGCCGAGGAAGTCTTGAAGTCGTTGCgtaagttttt ... ttcatttcagGCTTGCCGATTGATAAAGTGCAGAAATGCATGGG
EST: GGATAAGAAGTATAACAAGGATTGTGCCGAGGAAGTCTTGAAGTCGTTGC GCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATTEST: gi|169082333|gb|FE489506.1|FE489506
genomic: GGATAAGAAGTATAACAAGGATTGTGCCGAGGAAGTCTTGAAGTCGTTGCgtaagttttt ... ttcatttcagGCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATT
EST: GGATAAGAAGTATAACAAGGATTGTGCCGAGGAAGTCTTGAAGTCGTTGC GCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATTEST: gi|169081933|gb|FE486428.1|FE486428
genomic: GGATAAGAAGTATAACAAGGATTGTGCCGAGGAAGTCTTGAAGTCGTTGCgtaagttttt ... ttcatttcagGCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATT
EST: GGATAAGAAGTATAACAAGGATTGTGCCGAGGAAGTCTTGAAGTCGTTGC GCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATT
genomic: GGATAAGAAGTATAACAAGGATTGTGCCGAGGAAGTCTTGAAGTCGTTGCgtaagttttt ... ttcatttcagGCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATT
agttttttgcatacattttccttttcgcggctcacttacatgagtttcatttcagGCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAACAAGATGCGCAG
cacttac putative branch site (score: 52)
tttcatttc putative PPT
atacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttttgcatacattttccttttcgcggctcacttacatgagtttcatttcagGCTTGCCGATTGATAAAGTGCAGAAATGCATGGGAAACCCTGAGGCTGATTCAGAGAATACAGTGTTGAAGGAAGAACAAGATGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG