Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagaaacaaaaaacaaaactctataatcgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA

Basic information

species Selaginella moellendorffii
transcript EFJ06180
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G178415_T03 (Zea mays), 3'ss of exon 3
gtaaaagaaacaaaaaacaaaactctataatcgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA----------------------------------------------------
            |||||       ||    |   |   | | ||  |  ||   ||| |||||| || ||||| || ||  | || || |||||||||||||||||||| ||||||||  | ||||| ||||| ||||| || || || || ||||                                                    
-----gttggtgaaaaatctggtcctgatgtt-tgaaatcctttgacaaccc--aggttgatcctgatgaagttaatgccttggcacaattgatgacttggaaaacagCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTAGCCCTGGAGACCTGAGCATCTCTGAGCTTGAGAGGCTTACCCGAGTTTTTAC

upper sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G178415_T02 (Zea mays), 3'ss of exon 3
---------------------------------------gtaaaagaaacaaaaaacaaaactctataatcgcgcttttccttatcctcctgta-----gGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                                        | |  ||||          ||   | |  ||  | | ||    |||||     |     || |||||| || ||||| || ||  | || || |||||||||||||||||||| ||||||||  | ||||| ||||| ||||| || || || || ||||
atccatttccttcaaattaattttcctcttcatttaagactcattgaaatccgttggtgaaaaatctggtcctgatgtttgaaatcctttgacaacccagGTTGATCCTGATGAAGTTAATGCCTTGGCACAATTGATGACTTGGAAAACAGCAGTAGCTAACATACCATATGGAGGAGCCAAAGGTGGAATTGGATGTA

upper sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT5G07440.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------------------gtaaaagaaacaaaaaacaaaactctataatc-gcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                                                      |    | | |   ||   |    | |  | |  | | |||   || |     || ||| ||||||||| ||||| ||||||||||| ||| ||||||||||||| || || |||||  || ||||||| || || || || || || || || ||||
gtagggtcttttatcatttgttcttgatctaggatttaaagttgacaactttgggggttatagattgaatctagggatttgaattaagggttttgattttttggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTGCTGTAGCAGATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTA

upper sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------------gtaaaagaaacaaaaaacaaaactc----------tataat-cgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                                           |  || |||| |  |   ||  ||          ||| || |   |   |  |  |  || || ||| |||||| || |||||||||||| | || ||| | ||||| ||||||||||| || |||||  |||| |||||||| || || |||||||| || ||| 
gtttttgaccttttgactttgaccttttgaaccaaaactcaaatgtaacaaaccagtatacaatttcggttttggtatatgatgcaaaccggttatcgttttcttgcagGTTGATCCGGATGAAGTGAACGCATTGGCTCAGCTCATGACATGGAAAACAGCAGTGGCTAAGATTCCTTACGGAGGAGCTAAAGGAGGGATTGGTTGTG

upper sequence: EFJ06180 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------gtaaaagaaacaaaaaacaaaactctataatcgcgcttttcctt------atc------ctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                                       |       |||| |  | |   || ||  |||   ||      |||      ||  |||||| ||| ||||| || || || ||  | || ||  | ||||| ||||| ||||| ||||| ||| |||||||||| || ||||| ||||||||||| ||||
ccagggttttcatgtagctttaaattaaatctactctccagcttgggaacagatttgtgctattgcagtttcagtttggatgatcgcatagcttttgtagGTTGACCCAGATGAGGTAAATGCTTTGGCACAACTAATGACGTGGAAGACAGCAGTAGCAAATATTCCATACGGTGGGGCCAAAGGAGGGATAGGATGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaagaaacaaaaaacaaaactctataatcgcgcttttccttatcctcctgtagGCTGATCCAGACGAAGTGAACGCACTAGCGCAGTTGATGACTTGGAAAACAGCCGTAGCTAATCTTCCATACGGAGGCGCCAAGGGAGGGATAGGCTGTA
                             tcgcgcttttccttat  CT-rich tract
      aaacaaaaaacaaaa  TA-rich tract