Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcgaccgttgacatttcctgaccgctgtaaccgttgactgttgttttcttgcagTCGGCGACTTGAACCACCTGATATCGGCGACCATGAGCGGCGTGACGTGCTGCTTGCGCTTCCCCGGTCAACTCAACTCCGACCTCCGCAAGCTGGCGGT
Basic information
species | Selaginella moellendorffii |
transcript | EFJ05935 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ05935 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S35_125V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------gtaagtcgaccgttgacat-ttcctgaccg---ctgtaaccgttgactgttgttttcttgca--------gTCGGCGACTTGAACCACCTGATATCGGCGACCATGAGCGGCGTGACGTGCTGCTTGCGCTTCCCCGGTCAACTCAACTCCGACCTCCGCAAGCTGGCGGT
| | | || || ||| ||| | ||| || | || | | || ||| || || || |||||||| || || || || |||||||||||||| || |||||| | |||||||||||||| || || ||||| || || |||||||| ||
tctatctgcattctctgcgatgttgatcaattaacaaatttgagagatgctccagactgactttgtgggtgtcgtgtgggggctgctcgcatgggagcagTTGGAGATTTGAACCATCTCATCTCTGCAACCATGAGCGGCGTCACATGCTGCCTCCGCTTCCCCGGTCAGCTGAATTCCGATCTGCGGAAGCTGGCCGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcgaccgttgacatttcctgaccgctgtaaccgttgactgttgttttcttgcagTCGGCGACTTGAACCACCTGATATCGGCGACCATGAGCGGCGTGACGTGCTGCTTGCGCTTCCCCGGTCAACTCAACTCCGACCTCCGCAAGCTGGCGGT
ttgttttctt CT-rich tract
ttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtcgaccgttgacatttcctgaccgctgtaaccgttgactgttgttttcttgcagTCGGCGACTTGAACCACCTGATATCGGCGACCATGAGCGGCGTGACGTGCTGCTTGCGCTTCCCCGGTCAACTCAACTCCGACCTCCGCAAGCTGGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG