1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaaagtaaaacttttcaatctttttttaactatgttaccacaagGTCGGAGAGCCGAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGATTTTTGGAGAGAACTTACCCCATCCATCCAGTCGTTCTAGCCGGGATAT
species | Selaginella moellendorffii |
transcript | EFJ05549 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCACAGCCATATGGGATGGCTGTTGGATAACCAGGCTTTCCTAGACAAG GTCGGAGAGCCGAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGAEST: gi|169113271|gb|FE515222.1|FE515222
genomic: GGCACAGCCATATGGGATGGCTGTTGGATAACCAGGCTTTCCTAGACAAGgtaaaaagta ... ttaccacaagGTCGGAGAGCCGAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGA
EST: GGCACAGCCATATGGGATGGCTATTGGATAACCAGGCTTTCCTAGACAAG GTCGGGGAGCCAAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGGEST: gi|169113270|gb|FE515221.1|FE515221
genomic: GGCACAGCCATATGGGATGGCTGTTGGATAACCAGGCTTTCCTAGACAAGgtaaaaagta ... ttaccacaagGTCGGAGAGCCGAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGA
EST: GGCACAGCCATATGGGATGGCTATTGGATAACCAGGCTTTCCTAGACAAG GTCGGGGAGCCAAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGG
genomic: GGCACAGCCATATGGGATGGCTGTTGGATAACCAGGCTTTCCTAGACAAGgtaaaaagta ... ttaccacaagGTCGGAGAGCCGAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGA
gtaaaaagtaaaacttttcaatctttttttaactatgttaccacaagGTCGGAGAGCCGAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGATTTTTGGAGAGAACTTACCCCATCCATCCAGTCGTTCTAGCCGGGATAT
ttttaac putative branch site (score: 5)
taaaaagtaaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaagtaaaacttttcaatctttttttaactatgttaccacaagGTCGGAGAGCCGAGCAATGTGGGTGATTTGAGGGGCGACGCGTTTTACCGATTTTTGGAGAGAACTTACCCCATCCATCCAGTCGTTCTAGCCGGGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA