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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcaagaagttatttctccacagcttttcatatgaattgatcgaatgtctcgcagCTCAATGCCGGGACCACGACGCAACAGCTGCTTGACCATTTCCGGATCGACGTTGTCCTTCATTACGGCATCGCAGGAAGCTCGAATCCTTCGCTTCACA

Basic information

species Selaginella moellendorffii
transcript EFJ04958
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169115404|gb|FE516145.1|FE516145
EST:     GAACAATCCATGGAAAGCGTTCCATTGTCGTCATCTCTGGTCTTTCCATG                         CTCAATGCCGGGATCACGACGCAACAGCTGCTTGACCACTTCCGGATCGAC
genomic: GAACAATCCATGGAAAGCGTTCCATTGTCGTCATCTCTGGTCTTTCCATGgtttgcaaga ... tgtctcgcagCTCAATGCCGGGACCACGACGCAACAGCTGCTTGACCATTTCCGGATCGAC
EST: gi|70669538|gb|DN838115.1|DN838115
EST:     GAACAATCCATGGAAAGCGTTCCATTGTCGTCATCTCTGGTCTTTCCATG                         CTCAATGCCGGGACCACGACGCAACAGCTGCTTGACCATTTCCGGATCGAC
genomic: GAACAATCCATGGAAAGCGTTCCATTGTCGTCATCTCTGGTCTTTCCATGgtttgcaaga ... tgtctcgcagCTCAATGCCGGGACCACGACGCAACAGCTGCTTGACCATTTCCGGATCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaagaagttatttctccacagcttttcatatgaattgatcgaatgtctcgcagCTCAATGCCGGGACCACGACGCAACAGCTGCTTGACCATTTCCGGATCGACGTTGTCCTTCATTACGGCATCGCAGGAAGCTCGAATCCTTCGCTTCACA
                                  aattgat  putative branch site (score: 4)
                        ttttcatatgaatt  TA-rich tract