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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaccaactcctagcgtgttttttcttttttcttcttttgctcttcacgagatggttcttcatctctttagTTGTACATTGGAAGGTGGTGACAAGATTGTGGATTGTCCTCCCACTTTGACAATGTATGCGTTTGATGCCGCTGTAAGCGTCATCAAAGGTCTTGTTTGT

Basic information

species Selaginella moellendorffii
transcript EFJ04408
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ04408 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT5G10330.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtgaccaactcctagcgtgttttttcttttttcttcttttg-----ctcttcacgagatggttcttcatctctt-tagTTGTACATTGGAAGGTGGTGACAAGATTGTGGATTGTCCTCCCACTTTGACAATGTATGCGTTTGATGCCGCTGTAAGCGTCATCAAAGGTCTTGTTTGT
||| |    |||    |    | |   |   ||   |||||          | ||  |    |    ||   | ||||  || ||    || ||   ||| || |||||| | ||||||||||| |||||  ||||||||| ||||||||| ||||| |  |  | ||   ||| |    | 
gtatggcttcaagatttgatttttcagtcaattgagcttctaccagaatcgtattttctgactaaaactctgtttcttgcagATGCGTGTTAGATCCTGGGGAGAAGATTATAGATTGTCCTCCAACTTTCTCAATGTATGTGTTTGATGCGGCTGTGAATGG-AGCAGGTGTCATTAAAG-

upper sequence: EFJ04408 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv18s0072g00940.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------gtaagtgaccaactcctagcgtgtttt------ttcttttttcttcttttgctcttcacgagatggttcttcatctctttagTTGTACATTGGAAGGTGGTGACAAGATTGTGGATTGTCCTCCCACTTTGACAATGTATGCGTTTGATGCCGCTGTAAGCGTCATCAAAGGTCTTGTTTGT
                                                    |  ||    |  | |||     || |      | |   ||  || ||||| |  | |    || |  ||  ||  |   || |||  | ||||   |||||||||||||||||||||||| || ||||| ||||||||||  |||||||| ||||| |  |        | |||       
gttagaaatggaagattttgtgtttacttgagctttaaaattatattgatctttggtttgtagtttctatttaattctaccaattcccaattgtttattttgtttattattgcattgacctctattac---agATGTGTACTGGATCCTGGTGACAAGATTGTGGATTGTCCGCCAACTTTCACAATGTATGAATTTGATGCTGCTGTTAATGGGGCACTTGTTCTCAAAG--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttttcttttttcttcttttgctcttcacgagatggttcttcatctctttagTTGTACATTGGAAGGTGGTGACAAGATTGTGGATTGTCCTCCCACTTTGACAATGTATGCGTTTGATGCCGCTGTAAGCGTCATCAAAGGTCTTGTTTGT
                                       ttcttcatctcttt  CT-rich tract
         ttttttcttctttt  TA-rich tract