1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagaactgtaattttcctgtcttgactggttagtttttatatttcgttcctgtcccagGAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCG
species | Selaginella moellendorffii |
transcript | EFJ27458 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169095350|gb|FE496741.1|FE496741
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cctgtcccagGAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169086889|gb|FE496151.1|FE496151
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cctgtcccagGAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169080013|gb|FE487899.1|FE487899
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cctgtcccagGAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cctgtcccagGAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
aactgtaattttcctgtcttgactggttagtttttatatttcgttcctgtcccagGAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCG
tcttgac putative branch site (score: 25)
tttcgttcctgtccc putative PPT
ttagtttttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaactgtaattttcctgtcttgactggttagtttttatatttcgttcctgtcccagGAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG