1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtgtcacctctttcattttccgtattctacaaaaacaccaacctgagatctctctacagGCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCAAAGACGTGCTGGCCAAGTGCTACG
species | Selaginella moellendorffii |
transcript | EFJ20933 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAG GCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCEST: gi|169068559|gb|FE479682.1|FE479682
genomic: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAGgtgtcacctc ... ctctctacagGCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
EST: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAG GCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCEST: gi|169027196|gb|FE436107.1|FE436107
genomic: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAGgtgtcacctc ... ctctctacagGCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
EST: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAG GCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
genomic: AGAAACTCAAAAGTTTGATTCCCCGCCAGCTCTTCAAAATACCAATTCAGgtgtcacctc ... ctctctacagGCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGC
cacctctttcattttccgtattctacaaaaacaccaacctgagatctctctacagGCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCAAAGACGTGCTGGCCAAGTGCTACG
tctctctac CT-rich tract
tttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtcacctctttcattttccgtattctacaaaaacaccaacctgagatctctctacagGCGTGCCTTGGGTCTAGAGTCATTGCCAGTGAACAAATCTCAGCCATGCGCAAAGACGTGCTGGCCAAGTGCTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG