1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaagaactgtaattttcctgtcttgacttgttagtttttatatttctttcttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCG
species | Selaginella moellendorffii |
transcript | EFJ07343 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169033080|gb|FE441412.1|FE441412
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169063067|gb|FE471173.1|FE471173
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169057926|gb|FE465524.1|FE465524
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169052749|gb|FE461166.1|FE461166
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169115293|gb|FE517009.1|FE517009
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169046222|gb|FE456381.1|FE456381
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169030319|gb|FE440044.1|FE440044
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCTCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169024980|gb|FE433813.1|FE433813
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169086883|gb|FE496145.1|FE496145
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169024987|gb|FE434639.1|FE434639
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCEST: gi|169036319|gb|FE444696.1|FE444696
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
EST: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCT GAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
genomic: CTTTAGCACGATCCAACTCTTTTGTGGGAACAGAGGAGTATATTGCCCCTgtaagaactg ... cttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTC
aactgtaattttcctgtcttgacttgttagtttttatatttctttcttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCG
tcttgac putative branch site (score: 52)
tttttatatttctttc putative PPT
ttgttagtttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaactgtaattttcctgtcttgacttgttagtttttatatttctttcttgtcccagGAAATCATCAAAGGCGCAGGCCATGGAAGTGCCGTAGATTGGTGGGCTTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG