1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgtgtgtatccgctaaaagatagagatcctagctctaaattcctcccttccagGCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCAGTGGTTGCCGGCAAGAGCCCGTGCTGTATATGCTCGGACCTCCTGGCAA
species | Selaginella moellendorffii |
transcript | EFJ24868 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ATTACAAGACGGAGACATCGCTCAGGGGCGGTTGCAATAACATTCTCAAG GCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCAEST: gi|169097118|gb|FE500082.1|FE500082
genomic: ATTACAAGACGGAGACATCGCTCAGGGGCGGTTGCAATAACATTCTCAAGgtgtgtgtat ... tcccttccagGCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCA
EST: ATTACAAGACGGAGACATCGCTCAGGGGCGGTTGCAATAACATTCTCAAG GCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCAEST: gi|169020469|gb|FE431716.1|FE431716
genomic: ATTACAAGACGGAGACATCGCTCAGGGGCGGTTGCAATAACATTCTCAAGgtgtgtgtat ... tcccttccagGCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCA
EST: ATTACAAGACGGAGACATCGCTCAGGGGCGGTTGCAATAACATTCTCAAG GCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCAEST: gi|169097541|gb|FE497983.1|FE497983
genomic: ATTACAAGACGGAGACATCGCTCAGGGGCGGTTGCAATAACATTCTCAAGgtgtgtgtat ... tcccttccagGCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCA
EST: ATTACAAGACGGAGACATCGCTCAGGGGCGGTTGCAATAACATTCTCAAG GCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCA
genomic: ATTACAAGACGGAGACATCGCTCAGGGGCGGTTGCAATAACATTCTCAAGgtgtgtgtat ... tcccttccagGCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCA
gtgtgtgtatccgctaaaagatagagatcctagctctaaattcctcccttccagGCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCAGTGGTTGCCGGCAAGAGCCCGTGCTGTATATGCTCGGACCTCCTGGCAA
ctctaaa putative branch site (score: 23)
ttcctcccttcc CT-rich tract
taaaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgtatccgctaaaagatagagatcctagctctaaattcctcccttccagGCCGATCGTCGCGATCTACAACTGAAGCGCTACAGCTCCTCCAGGACGGCAGTGGTTGCCGGCAAGAGCCCGTGCTGTATATGCTCGGACCTCCTGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA