1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatgtcgactggaagcttacgtctgtctcatgcatgaatgctatagGTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAAAGCTGGCATCTATACATATAAAGCGATAGTGGGGAGGCTCGCCGGCCGT
species | Selaginella moellendorffii |
transcript | EFJ09511 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ACGTCTTTAGCATGAAGTTGTCCCTCACGCTACCACAATTGAGTGCACAG GTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAAEST: gi|169067629|gb|FE475826.1|FE475826
genomic: ACGTCTTTAGCATGAAGTTGTCCCTCACGCTACCACAATTGAGTGCACAGgtatgtcgac ... aatgctatagGTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAA
EST: ACGTCTTTAGCATGAAGTTGTCCCTCACGCTACCACAATTGAGTGCACAG GTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAAEST: gi|169082691|gb|FE486731.1|FE486731
genomic: ACGTCTTTAGCATGAAGTTGTCCCTCACGCTACCACAATTGAGTGCACAGgtatgtcgac ... aatgctatagGTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAA
EST: ACGTCTTTAGCATGAAGTTGTCCCTCACGCTACCCCAATTGAGTGCACAG GTTTATAGACTTGCAAAAATTTGGGATGCTGCAGTCAGTGTGATGTAAAAAEST: gi|169023280|gb|FE430008.1|FE430008
genomic: ACGTCTTTAGCATGAAGTTGTCCCTCACGCTACCACAATTGAGTGCACAGgtatgtcgac ... aatgctatagGTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAA
EST: ACGTCTTTAGCATGAAGTTGTCCCTCACGCTACCACAATTGAGTGCACAG GTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAA
genomic: ACGTCTTTAGCATGAAGTTGTCCCTCACGCTACCACAATTGAGTGCACAGgtatgtcgac ... aatgctatagGTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAA
gtatgtcgactggaagcttacgtctgtctcatgcatgaatgctatagGTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAAAGCTGGCATCTATACATATAAAGCGATAGTGGGGAGGCTCGCCGGCCGT
agcttac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcgactggaagcttacgtctgtctcatgcatgaatgctatagGTTTATAGACTTGCAAAAATCTGGGATGCTGCAGTCAGTGTGATGTAAAAAAGCTGGCATCTATACATATAAAGCGATAGTGGGGAGGCTCGCCGGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG