1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaggcagggttcggtgcctgacattttttaacctctttatcggcagGAGAGCTGGCCCATGATTTGCGTTTCCTAGCCTCTGTTGTATCCCAAAGCTTTCTTGCGTTTGGTGATATATTGGAGCTGTACAGAAAGTTTCTTGAGTT
species | Selaginella moellendorffii |
transcript | EFJ33165 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GCTTTACGCTGTGGAACATACTGGCGATCGATCTTCGACTTCTGTACAAG GAGAGCTGGCCCATGATATGCGTTTCCTAGCCTCTGTTGTEST: gi|169041917|gb|FE449904.1|FE449904
genomic: GCTTTACGCTGTGGAACATACTGGCGATCGATCTTCGACTTCTGTACAAGgtaggcaggg ... ttatcggcagGAGAGCTGGCCCATGATTTGCGTTTCCTAGCCTCTGTTGT
EST: GCTTTACGCTGTGGAACATACTGGCGATCGATCTTCGACTTCTGTACAAG GAGAGCTGGCCCATGATTTGCGTTTCCTAGCCTCTGTTGTATCCCAAAGCTEST: gi|169098489|gb|FE498519.1|FE498519
genomic: GCTTTACGCTGTGGAACATACTGGCGATCGATCTTCGACTTCTGTACAAGgtaggcaggg ... ttatcggcagGAGAGCTGGCCCATGATTTGCGTTTCCTAGCCTCTGTTGTATCCCAAAGCT
EST: GCTTTACGCTGTGGAACATACTGGCGATCGATCTTCGACTTCTGTACAAG GAGAGCTGGCCCATGATTTGCGTTTCCTAGCCTCTGTTGTGTCCCAAAGCT
genomic: GCTTTACGCTGTGGAACATACTGGCGATCGATCTTCGACTTCTGTACAAGgtaggcaggg ... ttatcggcagGAGAGCTGGCCCATGATTTGCGTTTCCTAGCCTCTGTTGTATCCCAAAGCT
gtaggcagggttcggtgcctgacattttttaacctctttatcggcagGAGAGCTGGCCCATGATTTGCGTTTCCTAGCCTCTGTTGTATCCCAAAGCTTTCTTGCGTTTGGTGATATATTGGAGCTGTACAGAAAGTTTCTTGAGTT
ttttaac putative branch site (score: 7)
ttttttaacctcttt CT-rich tract
acattttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcagggttcggtgcctgacattttttaacctctttatcggcagGAGAGCTGGCCCATGATTTGCGTTTCCTAGCCTCTGTTGTATCCCAAAGCTTTCTTGCGTTTGGTGATATATTGGAGCTGTACAGAAAGTTTCTTGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT