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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttaccacatatctgaatacaatcaattccatttcattctaaccgagcgcttttgtccagCAAGTGGAAACGCAAATAAAAAGGCGCATGGGAATCGGCAGCTTCATGTCGGAACGGCGCTTGATCGATGAACTAATGCGGATGGGAATGCCCGAACCGA

Basic information

species Selaginella moellendorffii
transcript EFJ31205
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31205 (Selaginella moellendorffii), 3'ss of exon 17
lower sequence: PP1S355_49V6.1 (Physcomitrella patens), 3'ss of exon 17
------------------------------gttcgttaccacat---atctgaatacaatcaattccatttcattctaaccgagcgc---ttttgtccagCAAGTGGAAACGCAAATAAAAAGGCGCATGGGAATCGGCAGCTTCATGTCGGAACGGCGCTTGATCGATGAACTAATGCGGATGGGAATGCCCGAACCGA
                                |  |||   |||   ||  |  |    |  ||| |||||  |   ||  |   ||   ||   | ||||||||||||  |||| | |||||||||||||| |||||||||||| ||||||| || ||| | || |||||| | ||||| |  ||  ||   ||  | |
ctgattgatcgtactgtaatttgatttccaactttttaaggcatgaaatgcggcttgcgtttatttcatttggtcacaagtggttgctggttccatgcagCAAGTGGAATTGCAAGTCAAAAGGCGCATGGGCATCGGCAGCTTCTTGTCGGAGCGACGCCTCATAGATGAAATTATGCGAACCGGTCTGGGAGAGTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatatctgaatacaatcaattccatttcattctaaccgagcgcttttgtccagCAAGTGGAAACGCAAATAAAAAGGCGCATGGGAATCGGCAGCTTCATGTCGGAACGGCGCTTGATCGATGAACTAATGCGGATGGGAATGCCCGAACCGA
                               ttctaac  putative branch site (score: 1)
                                            cttttgtcc  putative PPT
          aatacaat  TA-rich tract