Sequence
atgc intronic sequence ATGC exonic sequencegtacactgtctagtattccaaaccgactcatttagctcttatctgtcacgtttttgtagTTTGGCAAAGGTGTGTACTTTGCGGACCTGGTGAGTAAGAGCGCGCAGTACTGCTTCACGAACAGGTCCAATCCAGTGGGGCTGATGCTACTGTCCGAGG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ30299 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ30299 (Selaginella moellendorffii), 3'ss of exon 17
lower sequence: GLYMA19G34580.1 (Glycine max), 3'ss of exon 17
------------------------------------------------------------gtacactgtctagtattccaaaccgactcatttagctcttatctgtcacgtttttgtagTTTGGCAAAGGTGTGTACTTTGCGGACCTGGTGAGTAAGAGCGCGCAGTACTGCTTCACGAACAGGTCCAATCCAGTGGGGCTGATGCTACTGTCCGAGG
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gttctatctattactcccctctcatgcctcctttttttttgcttatatttttggatactaatac-ctaattaactttcca---caacagaactaaagtctgaatattttgcttt-gcagTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAG
upper sequence: EFJ30299 (Selaginella moellendorffii), 3'ss of exon 17
lower sequence: GLYMA03G31820.1 (Glycine max), 3'ss of exon 18
------------------------------------------------------gtacac-tgtctagt--attccaaaccgactcatttagctcttatctgtcacgtttttgtagTTTGGCAAAGGTGTGTACTTTGCGGACCTGGTGAGTAAGAGCGCGCAGTACTGCTTCACGAACAGGTCCAATCCAGTGGGGCTGATGCTACTGTCCGAGG
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gttctatctattactcccctctcatgcctcctttttttttgcttatacttttggatacaaatacctaattaactttccacagaagcactaaagtctgaa-tattttgcatt-gcagTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAG
upper sequence: EFJ30299 (Selaginella moellendorffii), 3'ss of exon 17
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 17
------------------------------------------------------------------gtacactgtc----tagtattc-caaaccgactcatttagctcttatctgtcacgtttttgtagTTTGGCAAAGGTGTGTACTTTGCGGACCTGGTGAGTAAGAGCGCGCAGTACTGCTTCACGAACAGGTCCAATCCAGTGGGGCTGATGCTACTGTCCGAGG
|| || | || || | | ||||| ||||||| | | | | | | || |||||||||||||| || || |||||||| |||||||| |||||||| || ||||| |||| || | ||| |||||||| || ||||||| ||| || |
gtctttctctctctccctctttcattttgtacacagatcataagtcattcaatcttctttactgtagttcattttcattttaaaacacacaaacatactcattaatcattgcaatcttat-ttattgtagTTTGGCAAGGGGGTTTACTTTGCTGACCTGGTCAGTAAGAGTGCTCAGTATTGCTATACTGATAGGAAAAATCCAGTTGGTTTGATGCTTCTGAGTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgtctagtattccaaaccgactcatttagctcttatctgtcacgtttttgtagTTTGGCAAAGGTGTGTACTTTGCGGACCTGGTGAGTAAGAGCGCGCAGTACTGCTTCACGAACAGGTCCAATCCAGTGGGGCTGATGCTACTGTCCGAGG
cgttttt CT-rich tract
tttttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacactgtctagtattccaaaccgactcatttagctcttatctgtcacgtttttgtagTTTGGCAAAGGTGTGTACTTTGCGGACCTGGTGAGTAAGAGCGCGCAGTACTGCTTCACGAACAGGTCCAATCCAGTGGGGCTGATGCTACTGTCCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT