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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtgccttttttattgtctttgtgatcatcttcttgtttcttgcagAGCGGGTGGCAGAAAGTATGCGTAGAAAGTCCTGGAATACACGAATTGCACTTTCTCTGGGCTTGTGTTTCTTTTGGTGCTCCCATTTTCTCATTTGACA

Basic information

species Selaginella moellendorffii
transcript EFJ25438
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169078374|gb|FE490407.1|FE490407
EST:     CGGTTCCCTTGGAAATCACG                         AGCGGGTGGCAGAAAGTATGCGTAGAAAGTCCTGGAATACACGAATTGCAC
genomic: CGGTTCCCTTGGAAATCACGgtcggtgcct ... tttcttgcagAGCGGGTGGCAGAAAGTATGCGTAGAAAGTCCTGGAATACACGAATTGCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcggtgccttttttattgtctttgtgatcatcttcttgtttcttgcagAGCGGGTGGCAGAAAGTATGCGTAGAAAGTCCTGGAATACACGAATTGCACTTTCTCTGGGCTTGTGTTTCTTTTGGTGCTCCCATTTTCTCATTTGACA
                                       tcatcttcttgtttct  CT-rich tract
               ttttttattgtcttt  TA-rich tract