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gtgaaactctttccatggttctagctttgatcttactggaagtttttctttctcttgtgtttgtagAGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGTAGCTATGGAGCTCGGGGCCGTGACAGACGAAGAGCTCTTCGTGATGTTA
species | Selaginella moellendorffii |
transcript | EFJ24732 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TTTTGCGTGGAGTGTGGAAGGAACTTATGTGCAAAGCTATTTTTATCCAG AGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGTEST: gi|169061136|gb|FE469027.1|FE469027
genomic: TTTTGCGTGGAGTGTGGAAGGAACTTATGTGCAAAGCTACTTCTATCCAGgtgaaactct ... gtgtttgtagAGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGT
EST: TTTTGCGTGGAGTGTGGAAGGAACTTATGTGCAAAGCTACTTCTATCCAG AGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGTEST: gi|169019721|gb|FE426600.1|FE426600
genomic: TTTTGCGTGGAGTGTGGAAGGAACTTATGTGCAAAGCTACTTCTATCCAGgtgaaactct ... gtgtttgtagAGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGT
EST: TTTTGCGTGGAGTGTGGAAGGAACTTATGTGCAAAGCTACTTCTATCCAG AGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGTEST: gi|169022325|gb|FE431284.1|FE431284
genomic: TTTTGCGTGGAGTGTGGAAGGAACTTATGTGCAAAGCTACTTCTATCCAGgtgaaactct ... gtgtttgtagAGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGT
EST: TTTTGCGTGGAGTGTGGAAGGAACTTATGTGCAAAGCTACTTCTATCCAG AGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGT
genomic: TTTTGCGTGGAGTGTGGAAGGAACTTATGTGCAAAGCTACTTCTATCCAGgtgaaactct ... gtgtttgtagAGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGT
tccatggttctagctttgatcttactggaagtttttctttctcttgtgtttgtagAGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGTAGCTATGGAGCTCGGGGCCGTGACAGACGAAGAGCTCTTCGTGATGTTA
atcttac putative branch site (score: 15)
tttttctttctcttgt putative PPT
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaactctttccatggttctagctttgatcttactggaagtttttctttctcttgtgtttgtagAGGAGCCAATCCCGCTGCTGTTGATAGAGCAGGGAAAACTCCATTAGAAGTAGCTATGGAGCTCGGGGCCGTGACAGACGAAGAGCTCTTCGTGATGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT