1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gttcgtggttccttgcttttatgtttctttcaaggcaggcaagtaaaaaacattgtggctgcctgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGGATGCTCGCGAACTTAAAGAGTACATGGAAGTGATGACCATGGTGGACG
species | Selaginella moellendorffii |
transcript | EFJ12029 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAG AAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGEST: gi|169020918|gb|FE431996.1|FE431996
genomic: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAGgttcgtggtt ... tgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTG
EST: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAG AAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGEST: gi|169018415|gb|FE427224.1|FE427224
genomic: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAGgttcgtggtt ... tgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTG
EST: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAG AAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGEST: gi|169027982|gb|FE435379.1|FE435379
genomic: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAGgttcgtggtt ... tgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTG
EST: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAG AAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGEST: gi|169058950|gb|FE468758.1|FE468758
genomic: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAGgttcgtggtt ... tgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTG
EST: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAG AAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGEST: gi|169100738|gb|FE502172.1|FE502172
genomic: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAGgttcgtggtt ... tgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTG
EST: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAG AAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGEST: gi|169050732|gb|FE457902.1|FE457902
genomic: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAGgttcgtggtt ... tgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTG
EST: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAG AAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTG
genomic: ATACCTGTCTCGAGAAATATGTCTTATGCGGGGATCATATCTATCACAAGgttcgtggtt ... tgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTG
ttatgtttctttcaaggcaggcaagtaaaaaacattgtggctgcctgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGGATGCTCGCGAACTTAAAGAGTACATGGAAGTGATGACCATGGTGGACG
gcctgac putative branch site (score: 9)
aagtaaaaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtggttccttgcttttatgtttctttcaaggcaggcaagtaaaaaacattgtggctgcctgacgaacagAAGGATCAATTTCACCGTCCATTGCCAACATTTCTCCAGCTGCTAGAATTGGATGCTCGCGAACTTAAAGAGTACATGGAAGTGATGACCATGGTGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA