1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaccctgtctatatttactggcttttgtattgaattcgcttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCATACCACAGCTCAAGAGAACGCACTGGTGGAGAAGCTGCAGGAAGAAGTA
species | Selaginella moellendorffii |
transcript | EFJ11831 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169115605|gb|FE517815.1|FE517815
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAEST: gi|169040066|gb|FE447039.1|FE447039
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169031779|gb|FE440609.1|FE440609
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169115604|gb|FE517814.1|FE517814
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169092904|gb|FE496342.1|FE496342
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169020660|gb|FE428826.1|FE428826
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: AAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169030308|gb|FE440033.1|FE440033
genomic: AAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169040065|gb|FE447038.1|FE447038
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169067312|gb|FE473897.1|FE473897
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169030807|gb|FE439791.1|FE439791
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCAACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169062310|gb|FE470500.1|FE470500
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169045077|gb|FE452793.1|FE452793
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCAEST: gi|169041178|gb|FE447722.1|FE447722
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
EST: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAG GTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
genomic: GAACGTGGAGAAAAGACGAACGATGTCCTGGTAGTACTGGAGAACGAAAGgtaccctgtc ... cttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCA
gtaccctgtctatatttactggcttttgtattgaattcgcttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCATACCACAGCTCAAGAGAACGCACTGGTGGAGAAGCTGCAGGAAGAAGTA
ttcgctt CT-rich tract
ttttgtattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccctgtctatatttactggcttttgtattgaattcgcttgctgcagGTTTGAGAAGAAGCGACTTGAGAATGAACTGACCGTACTGAAAACCAAGCATACCACAGCTCAAGAGAACGCACTGGTGGAGAAGCTGCAGGAAGAAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT