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gtaagctcccagttcttagcattttttccaagatctggagctaaaactacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAAAAACCGGAAGATCTTTGCTTGTATTATCGAAACATCCAGACGCAAAGCC
species | Selaginella moellendorffii |
transcript | EFJ37688 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CGTGGCAATTTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAG GTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAAEST: gi|169099049|gb|FE501770.1|FE501770
genomic: CGTGGCAATCTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAGgtaagctccc ... ctacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAA
EST: CGTGGCAATTTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAG GTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAAEST: gi|169051123|gb|FE460230.1|FE460230
genomic: CGTGGCAATCTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAGgtaagctccc ... ctacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAA
EST: CGTGGCAATTTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAG GTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAAEST: gi|169024931|gb|FE433387.1|FE433387
genomic: CGTGGCAATCTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAGgtaagctccc ... ctacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAA
EST: CGTGGCAATCTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAG GTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAAEST: gi|169026684|gb|FE433970.1|FE433970
genomic: CGTGGCAATCTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAGgtaagctccc ... ctacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAA
EST: CGTGGCAATCTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAG GTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAAEST: gi|169087202|gb|FE493110.1|FE493110
genomic: CGTGGCAATCTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAGgtaagctccc ... ctacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAA
EST: CGTGGCAATTTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAG GTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAA
genomic: CGTGGCAATCTAACCCGAAGCCAGCGATCGAGATACTGTGTAACCAGCAGgtaagctccc ... ctacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAA
taagctcccagttcttagcattttttccaagatctggagctaaaactacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAAAAACCGGAAGATCTTTGCTTGTATTATCGAAACATCCAGACGCAAAGCC
agctaaa putative branch site (score: 9)
atttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctcccagttcttagcattttttccaagatctggagctaaaactacgcgcagGTTTTGTCTCCCGATATGAGCCTGGCAACTGTGAGAACATACATCTGGAAAAAACCGGAAGATCTTTGCTTGTATTATCGAAACATCCAGACGCAAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG