1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtaacttcacaagcaccgaactgtaccgcggtacttaccatacttttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTAGTTTCTTATGGTGATAAAATTGGTAATGCAAGCTACGATTCCATCATCA
species | Selaginella moellendorffii |
transcript | EFJ33911 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAG GCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTAEST: gi|169027167|gb|FE435064.1|FE435064
genomic: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAGgtaacttcac ... ttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTA
EST: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAG GCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTAEST: gi|169027308|gb|FE436167.1|FE436167
genomic: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAGgtaacttcac ... ttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTA
EST: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAG GCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTAEST: gi|169095774|gb|FE498894.1|FE498894
genomic: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAGgtaacttcac ... ttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTA
EST: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAG GCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTAEST: gi|169021628|gb|FE428845.1|FE428845
genomic: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAGgtaacttcac ... ttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTA
EST: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAG GCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTAEST: gi|169083026|gb|FE488548.1|FE488548
genomic: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAGgtaacttcac ... ttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTA
EST: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAG -CAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTA
genomic: ATGCCGTACTTGAACAAGTGATTGCGGAGCTAACGACGTTCTTGCGAAAGgtaacttcac ... ttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTA
gtaacttcacaagcaccgaactgtaccgcggtacttaccatacttttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTAGTTTCTTATGGTGATAAAATTGGTAATGCAAGCTACGATTCCATCATCA
tacttac putative branch site (score: 5)
tacttttctc putative PPT
atactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttcacaagcaccgaactgtaccgcggtacttaccatacttttctcggcagGCAAATAGAGCTTTGCGGCAAGCGTCTCTTGGTACTTTAAATGCTTTATTAGTTTCTTATGGTGATAAAATTGGTAATGCAAGCTACGATTCCATCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT