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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgatttactcatgagtttttggtggcattactatttacgtgttgcagTGCTACTCTTCTGATCCTTCTATCGCGGATGGATATTTTTCTGTTCTTGCCGAAGTGTACATGCGGTACGAGATACCAAGGTGCGACACCCAAAGACTGT

Basic information

species Selaginella moellendorffii
transcript EFJ32912
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32912 (Selaginella moellendorffii), 3'ss of exon 16
lower sequence: PP1S1_377V6.1 (Physcomitrella patens), 3'ss of exon 16
----------------------------------------------------------------------------------------------------------------------gtttgtgatttac-tcatgagtttttggtggcattactatttacgt-gttgcagTGCTACTCTTCTGATCCTTCTATCGCGGATGGATATTTTTCTGTTCTTGCCGAAGTGTACATGCGGTACGAGATACCAAGGTGCGACACCCAAAGACTGT
                                                                                                                      |||   |   ||  |  | | || ||  |    ||||| ||  ||| ||||||||| ||||| || |||||||| || || || || |||||| |||| || || ||||||||||||||  | ||  |||| |  || || |  | | | ||  
gtatggcggttgatttttaaataaaaacgtattacaaatacttaaataactcttaatgccgtcaatagtctgatgggtggcatgtaagtgtcgcagttctagtcttcttgaagtactagttgacgccctatgttttcatttatttatttatttacttttctcgttgttgcagTGTTACTCATCAGATCCTTCCATAGCAGACGGGTATTTTACTGTCCTGGCTGAAGTGTACATGCGTCAAGAAGTACCCAAATGTGATATACCACGTCTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtgatttactcatgagtttttggtggcattactatttacgtgttgcagTGCTACTCTTCTGATCCTTCTATCGCGGATGGATATTTTTCTGTTCTTGCCGAAGTGTACATGCGGTACGAGATACCAAGGTGCGACACCCAAAGACTGT
                                       attactattta  TA-rich tract