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gtatgatatcgatattcttttaaagtttctataacatatattacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGATTCACATAGAGGCTGGCAGCTTTCAGTTCGAAAACTTATAAAAGAACC
species | Selaginella moellendorffii |
transcript | EFJ32660 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG GCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGEST: gi|169071159|gb|FE477836.1|FE477836
genomic: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCGgtatgatatc ... ttacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
EST: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG GCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGEST: gi|169111105|gb|FE514242.1|FE514242
genomic: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCGgtatgatatc ... ttacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
EST: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG GCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGEST: gi|169071160|gb|FE477837.1|FE477837
genomic: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCGgtatgatatc ... ttacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
EST: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG GCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGEST: gi|169111104|gb|FE514241.1|FE514241
genomic: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCGgtatgatatc ... ttacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
EST: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG GCCGCAATCAGATTTAGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGEST: gi|169083988|gb|FE493628.1|FE493628
genomic: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCGgtatgatatc ... ttacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
EST: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG GCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGEST: gi|169036112|gb|FE445659.1|FE445659
genomic: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCGgtatgatatc ... ttacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
EST: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG GCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGEST: gi|169030220|gb|FE437098.1|FE437098
genomic: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCGgtatgatatc ... ttacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
EST: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG GCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
genomic: CTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCGgtatgatatc ... ttacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAG
gtatgatatcgatattcttttaaagtttctataacatatattacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGATTCACATAGAGGCTGGCAGCTTTCAGTTCGAAAACTTATAAAAGAACC
ctataac putative branch site (score: 10)
atattcttttaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatatcgatattcttttaaagtttctataacatatattacctgcagGCCGCAATCAGATTTCGAGAGTTTTGTCAACATCGGAGCTTGGCTAAAGAGATTCACATAGAGGCTGGCAGCTTTCAGTTCGAAAACTTATAAAAGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC