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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaacgtttctccctctgcagcaaagtggcgattctaaaacatcggttctttgcgcagGCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTGGAGACGACCTGGTCCGAGCTACACGGGATCCCGTGGGACAAGACGCTGG

Basic information

species Selaginella moellendorffii
transcript EFJ29546
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169032136|gb|FE438769.1|FE438769
EST:     CTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAG                         GCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAAATGCTG
genomic: CTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAGgtaaaaacgt ... ctttgcgcagGCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTG
EST: gi|169028199|gb|FE432178.1|FE432178
EST:     CTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAG                         GCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTG
genomic: CTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAGgtaaaaacgt ... ctttgcgcagGCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTG
EST: gi|169035867|gb|FE443258.1|FE443258
EST:     CTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAG                         GCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTG
genomic: CTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAGgtaaaaacgt ... ctttgcgcagGCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTG
EST: gi|169028198|gb|FE432177.1|FE432177
EST:     CTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAG                         GCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTG
genomic: CTGACGCTTTCTGGCATCACAAGGACGCTATCCTGTGCTGTACCTGGAAGgtaaaaacgt ... ctttgcgcagGCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgtttctccctctgcagcaaagtggcgattctaaaacatcggttctttgcgcagGCTATGATCCCGGAGTTCGTGTTTGCAAACCGGGCCGGCCTGGAGATGCTGGAGACGACCTGGTCCGAGCTACACGGGATCCCGTGGGACAAGACGCTGG
                             ttctaaa  putative branch site (score: 2)
                                           ttctttgc  putative PPT
                            attctaaaa  TA-rich tract