1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgaagcttatgacaaggctagggatatggatcttactgttgttgtcttcacagGAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAGGGCTCCGAGCCAGATTCGCCCTTTGGCGAGGATGGATTGCCGAGAGGCC
species | Selaginella moellendorffii |
transcript | EFJ28825 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAG GAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAGEST: gi|169066731|gb|FE475461.1|FE475461
genomic: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAGgtatgaagct ... gtcttcacagGAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAG
EST: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAG GAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAGEST: gi|169021032|gb|FE430641.1|FE430641
genomic: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAGgtatgaagct ... gtcttcacagGAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAG
EST: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAG GAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAGEST: gi|169019479|gb|FE427165.1|FE427165
genomic: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAGgtatgaagct ... gtcttcacagGAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAG
EST: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAG GAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAGEST: gi|169083463|gb|FE495862.1|FE495862
genomic: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAGgtatgaagct ... gtcttcacagGAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAG
EST: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAG GAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAG
genomic: GCCCCGACGCACAATTCGACGAGGAGATCGAGACGGTCATCGAAGACAAGgtatgaagct ... gtcttcacagGAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAG
tatgaagcttatgacaaggctagggatatggatcttactgttgttgtcttcacagGAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAGGGCTCCGAGCCAGATTCGCCCTTTGGCGAGGATGGATTGCCGAGAGGCC
atcttac putative branch site (score: 15)
ttgtcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaagcttatgacaaggctagggatatggatcttactgttgttgtcttcacagGAGAGCGTCGAGGAGAACGAAGATGCTGAGCCAGGCTCCGAGGGTTCCGAGGGCTCCGAGCCAGATTCGCCCTTTGGCGAGGATGGATTGCCGAGAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG