1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaaggcctggctgctgttggaatgtggtgccgacgctggatatgttttttgtgtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGATCGACCGCGAGTACTTGGAGCGAGACAAGAACAACCCTCAGGTATACA
species | Selaginella moellendorffii |
transcript | EFJ26297 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169083877|gb|FE492789.1|FE492789
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169077256|gb|FE485142.1|FE485142
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACGTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169078485|gb|FE488360.1|FE488360
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169053211|gb|FE462486.1|FE462486
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACGTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169039037|gb|FE450443.1|FE450443
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169078955|gb|FE487634.1|FE487634
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169094797|gb|FE492948.1|FE492948
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACGTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169094958|gb|FE493005.1|FE493005
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACGTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGEST: gi|169039036|gb|FE450442.1|FE450442
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
EST: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAG CTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
genomic: CTAGGAAGGTCCTGAGCCACACTTTACTGATAACGGAGCTGTTCCAACAGgtaaggcctg ... gtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTG
tggctgctgttggaatgtggtgccgacgctggatatgttttttgtgtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGATCGACCGCGAGTACTTGGAGCGAGACAAGAACAACCCTCAGGTATACA
atatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcctggctgctgttggaatgtggtgccgacgctggatatgttttttgtgtgtgaccagCTCAAGTTCCCTATAAAGCCAGCGGACTTGAAGAAACGTATCGAGAGCCTGATCGACCGCGAGTACTTGGAGCGAGACAAGAACAACCCTCAGGTATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC