Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   
19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacacatcgcttattgttataaacttttgatagaacacatacctctctgctgtctagTGTTATCCTGCTGCCGATCCTGTCATTCTAGAACCAGTCATGCTTGTCGAGATCAAAGCCCCCACGGAGTTCCAGGGACCTGTGGTTGGCGACATCAACA

Basic information

species Selaginella moellendorffii
transcript EFJ18610
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169100390|gb|FE501187.1|FE501187
EST:     ATTCCAGTGAGCTTGCTTTCAAGCTGGCTGCTCTGTACGCATTTAGACAG                         TGTTACCCTGCTGCCGATCCTGTCATTCTAGAACCAGTCATGCTTGTCGAG
genomic: ATTCCAGTGAGCTTGCTTTCAAGCTGGCTGCTCTGTACGCATTTAGACAGgtaaaacaca ... tgctgtctagTGTTATCCTGCTGCCGATCCTGTCATTCTAGAACCAGTCATGCTTGTCGAG
EST: gi|169040304|gb|FE450241.1|FE450241
EST:     ATTCCAGTGAGCTTGCTTTCAAGCTGGCTGCTCTGTACGCATTTAGACAG                         TGTTACCCTGCTGCCGATCCTGTCATTCTAGAACCAGTCATGCTTGTCGAG
genomic: ATTCCAGTGAGCTTGCTTTCAAGCTGGCTGCTCTGTACGCATTTAGACAGgtaaaacaca ... tgctgtctagTGTTATCCTGCTGCCGATCCTGTCATTCTAGAACCAGTCATGCTTGTCGAG
EST: gi|169098404|gb|FE497758.1|FE497758
EST:     ATTCCAGTGAGCTTGCTTTCAAGCTGGCTGCTCTGTACGCATTTAGACAG                         TGTTATCCTGCTGCCGATCCTGTCATTCTAGAACCAGTCATGCTTGTCGAG
genomic: ATTCCAGTGAGCTTGCTTTCAAGCTGGCTGCTCTGTACGCATTTAGACAGgtaaaacaca ... tgctgtctagTGTTATCCTGCTGCCGATCCTGTCATTCTAGAACCAGTCATGCTTGTCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatcgcttattgttataaacttttgatagaacacatacctctctgctgtctagTGTTATCCTGCTGCCGATCCTGTCATTCTAGAACCAGTCATGCTTGTCGAGATCAAAGCCCCCACGGAGTTCCAGGGACCTGTGGTTGGCGACATCAACA
                      ttttgat  putative branch site (score: 4)
 cctctctgctgtct  putative PPT
 ttattgttataaactt  TA-rich tract