1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatgagaaaacgtaaacgggggagtgtttcgtgactgtcgcgcttttttcagGCAAACCAGTTGTGGGACATAATCTCCAGCGACGGATATATTTACGTCTGTGGAGATGCAAAAGGAATGGCAAAGGACGTGCACCGCACACTCCACACGA
species | Selaginella moellendorffii |
transcript | EFJ14342 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGAAGGCCCGACGAAAGAGTATGTGCAGGACATCATGATGAAGAAG GCAAACCAGTTGTGGGATATAATCTCCGGCGATGGATATATTTACGTCTGTEST: gi|169023112|gb|FE429164.1|FE429164
genomic: CAAGGGAAGGCCCGACGAAAGAGTATGTGCAGGACATCATGATGAAGAAGgtatgagaaa ... cttttttcagGCAAACCAGTTGTGGGACATAATCTCCAGCGACGGATATATTTACGTCTGT
EST: CAAGGGAAGGCCCGACGAAAGAGTATGTGCAGGACATCATGATGAAGAAG GCAAACCAGTTGTGGGATATAATCTCCGGCGATGGATATATTTACGTCTGT
genomic: CAAGGGAAGGCCCGACGAAAGAGTATGTGCAGGACATCATGATGAAGAAGgtatgagaaa ... cttttttcagGCAAACCAGTTGTGGGACATAATCTCCAGCGACGGATATATTTACGTCTGT
gtatgagaaaacgtaaacgggggagtgtttcgtgactgtcgcgcttttttcagGCAAACCAGTTGTGGGACATAATCTCCAGCGACGGATATATTTACGTCTGTGGAGATGCAAAAGGAATGGCAAAGGACGTGCACCGCACACTCCACACGA
cgcttttttc CT-rich tract
ttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagaaaacgtaaacgggggagtgtttcgtgactgtcgcgcttttttcagGCAAACCAGTTGTGGGACATAATCTCCAGCGACGGATATATTTACGTCTGTGGAGATGCAAAAGGAATGGCAAAGGACGTGCACCGCACACTCCACACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG