Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtatggaaagacttggcacattgactgattcagctcttcgttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTGGTCCAGAAACGGCACCACACCCGGCTATTTGCTAACGATCACGACGATA

Basic information

species Selaginella moellendorffii
transcript EFJ14095
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169025753|gb|FE433663.1|FE433663
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169052412|gb|FE462246.1|FE462246
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169110846|gb|FE509329.1|FE509329
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169053756|gb|FE461523.1|FE461523
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGTTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169076999|gb|FE485340.1|FE485340
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169081815|gb|FE486414.1|FE486414
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGTTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169026881|gb|FE432386.1|FE432386
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169078633|gb|FE487065.1|FE487065
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169108088|gb|FE511031.1|FE511031
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGTTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169026857|gb|FE434221.1|FE434221
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGTTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169076998|gb|FE485339.1|FE485339
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169027233|gb|FE435091.1|FE435091
EST:     TCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: TCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169026895|gb|FE432387.1|FE432387
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169092972|gb|FE495266.1|FE495266
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169021773|gb|FE430420.1|FE430420
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
EST: gi|169077159|gb|FE484538.1|FE484538
EST:     AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAG                         GCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG
genomic: AAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 32

CTCTGGATACAAACCTGGAAGAATCATCTTCTACAGAGATGGTGTGAGCGAAGGACAGTTCTACCAAGTTCTCCTTCACGAGCTGGATGCAATTAGAAAGgtatagtatg ... ttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTGGTCCAGAAACGGCACCACACCCGGCTATTTGCTAACGATCACGACGATA




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatagtatggaaagacttggcacattgactgattcagctcttcgttttggacagGCTTGCGCGTCACTCGAGCCGAACTATCAGCCTCTCGTGACGTTCGTTGTGGTCCAGAAACGGCACCACACCCGGCTATTTGCTAACGATCACGACGATA
                           gactgat  putative branch site (score: 32)
                                      ctcttcgtttt  putative PPT