1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtttttctcaattgttatcgtcattttcgttacattaacattctatttcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACAGTAATTCGGCTGTGGAGGTCGCTCGGCGCAAATTGGCGGAGGCAGAGA
species | Selaginella moellendorffii |
transcript | EFJ11831 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACEST: gi|169040066|gb|FE447039.1|FE447039
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACEST: gi|169031779|gb|FE440609.1|FE440609
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACEST: gi|169115604|gb|FE517814.1|FE517814
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACEST: gi|169030308|gb|FE440033.1|FE440033
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACEST: gi|169040065|gb|FE447038.1|FE447038
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACEST: gi|169067312|gb|FE473897.1|FE473897
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACEST: gi|169030807|gb|FE439791.1|FE439791
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACEST: gi|169045077|gb|FE452793.1|FE452793
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
EST: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAG GTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
genomic: CGTCTGCAGCCGACTTGCAAAAGCAAAGGGCTGCTCGTTTCGAAGAGCAGgtttttctca ... tcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCAC
ttttctcaattgttatcgtcattttcgttacattaacattctatttcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACAGTAATTCGGCTGTGGAGGTCGCTCGGCGCAAATTGGCGGAGGCAGAGA
cattaac putative branch site (score: 9)
ttctatttctt CT-rich tract
attaacattctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttctcaattgttatcgtcattttcgttacattaacattctatttcttgtgtagGTTCGTCTACAACTGGACCAGCTTACCAAGGCAGCTGATGAGACTCGGCACAGTAATTCGGCTGTGGAGGTCGCTCGGCGCAAATTGGCGGAGGCAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG