1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtacgtttgcgtagagttaattcttttacttacgttttttactgtctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAGCATCAAAAGTCAAGCA
species | Selaginella moellendorffii |
transcript | EFJ08380 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAAT GCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAEST: gi|169042900|gb|FE450512.1|FE450512
genomic: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAATgtacgtttgc ... ctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
EST: AACCGCTTATGATGGAGTACTCTCAATTGACAATGGATGACATTCTCAAT GCCAACATCAGCAACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAEST: gi|169076023|gb|FE481005.1|FE481005
genomic: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAATgtacgtttgc ... ctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
EST: AACCGCTTATGATGGAGTACTCTCAATTGACAATGGATGACATTCTCAAT GCCAACATCAGCAACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAEST: gi|169062412|gb|FE469471.1|FE469471
genomic: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAATgtacgtttgc ... ctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
EST: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAAT GCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAEST: gi|169097496|gb|FE497938.1|FE497938
genomic: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAATgtacgtttgc ... ctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
EST: AACCGCTTATGATGGAGTACTCTCAATTGACAATGGATGACATTCTCAAT GCCAACATCAGCAACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAEST: gi|169083538|gb|FE491410.1|FE491410
genomic: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAATgtacgtttgc ... ctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
EST: AACCGCTTATGATGGAGTACTCTCAATTGACAATGGATGACATTCTCAAT GCCAACATCAGCAACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAEST: gi|169083947|gb|FE493587.1|FE493587
genomic: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAATgtacgtttgc ... ctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
EST: AACCGCTTATGATGGAGTACTCTCAATTGACAATGGATGACATTCTCAAT GCCAACATCAGCAACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAEST: gi|169070007|gb|FE476476.1|FE476476
genomic: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAATgtacgtttgc ... ctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
EST: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAAT GCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
genomic: AGCCGCTTATGATGGAGTACTCTCAACTGACAATGGATGACATTCTCAATgtacgtttgc ... ctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTA
gtacgtttgcgtagagttaattcttttacttacgttttttactgtctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAGCATCAAAAGTCAAGCA
tacttac putative branch site (score: 4)
ttttttactgtctcc CT-rich tract
ttaattcttttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtttgcgtagagttaattcttttacttacgttttttactgtctccgtgcagGCCAACATTAGCGACGAGCTTCCAAAGGAAGAATGGGATTTAGAAGGTCTAGCATCAAAAGTCAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA