1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtggcagctgaacgttttccttttgttcattttttcactccttttcacttttttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
species | Selaginella moellendorffii |
transcript | EFJ07343 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGT-AG ATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGGEST: gi|169113824|gb|FE515372.1|FE515372
genomic: CAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAGgtggcagctg ... tttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
EST: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTA--A-- -TTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGGEST: gi|169057926|gb|FE465524.1|FE465524
genomic: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAGgtggcagctg ... tttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
EST: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAG ATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGGEST: gi|169113823|gb|FE515371.1|FE515371
genomic: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAGgtggcagctg ... tttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
EST: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTA--A-- -TTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGGEST: gi|169115293|gb|FE517009.1|FE517009
genomic: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAGgtggcagctg ... tttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
EST: GATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAG ATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGGEST: gi|169033081|gb|FE441413.1|FE441413
genomic: GATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAGgtggcagctg ... tttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
EST: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAG ATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGGEST: gi|169024981|gb|FE433814.1|FE433814
genomic: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAGgtggcagctg ... tttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
EST: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAG ATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
genomic: CTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAGTAAGgtggcagctg ... tttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
gctgaacgttttccttttgttcattttttcactccttttcacttttttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
ttttccttttgttcat CT-rich tract
ttttgttcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggcagctgaacgttttccttttgttcattttttcactccttttcacttttttggagcagATTTTATGCCGCAGAAGTCTTGGTTGCCTTGGAGTATCTTCATTGCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG