1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtttgtactgtttctatttgctgtagtttgacacgaaattaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTGCATTCTCAGGCTGAGGTCAAGCTCCATCAACTTTTACGTGAGATGCAC
species | Selaginella moellendorffii |
transcript | EFJ33842 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169067871|gb|FE473416.1|FE473416
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169055550|gb|FE464583.1|FE464583
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169049893|gb|FE458609.1|FE458609
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169099114|gb|FE502836.1|FE502836
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169068100|gb|FE477390.1|FE477390
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169038685|gb|FE450156.1|FE450156
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: TGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169019820|gb|FE426907.1|FE426907
genomic: TGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169082975|gb|FE488497.1|FE488497
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGTGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTEST: gi|169102500|gb|FE503903.1|FE503903
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
EST: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAG TGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
genomic: GTGGTTTATCTTGAGATCATGAAGCCATACGCAGAAGCAGTACTATATAGgtttgtactg ... ttaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATT
gtttgtactgtttctatttgctgtagtttgacacgaaattaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTGCATTCTCAGGCTGAGGTCAAGCTCCATCAACTTTTACGTGAGATGCAC
aattaat putative branch site (score: 16)
aaattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtactgtttctatttgctgtagtttgacacgaaattaattgcagTGGCGGTCGCTCTAATGGTGGGAACGAACTACCAATTTTTGATAGTCCATTGCATTCTCAGGCTGAGGTCAAGCTCCATCAACTTTTACGTGAGATGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG