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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttatcctagaactttgcaaactttgtttcgttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT

Basic information

species Selaginella moellendorffii
transcript EFJ26597
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: LOC_Os11g10420.2 (Oryza sativa), 3'ss of exon 14
----gtgagttatcctagaact------ttgcaaactttgtttcgttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT
    || |  | || |  ||||      ||||| |    ||||     |||| |||  || |||| || || |    ||||||||| || ||  ||||  | || || ||||| || ||| | ||||| |||||||||||||||||||||||||| ||  | || |||||||| ||   ||
gttagtcaactgtcttgtaactcatcatttgcagagggggttttacagttctaatg--ctatcttggtatggtt---gcagCAATGCGTGTCTCTGGTGCTTTCACTTATCAGTAGCAGCATGGATGCATGGCGTACTCGGCAGTATGATTACTACCAGAGAGTATTGAATGGGATTTTAT

upper sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: GRMZM2G176698_T01 (Zea mays), 3'ss of exon 15
-----gtgagttatcctagaactttgcaaactttgtttcgttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT
      | | | ||| | ||   |    | | ||  |     ||| |  |     ||   |  || |||||| ||||||||||| ||| ||||  | || || ||||| || ||| | ||||||||||| |||||||| ||||||||||| ||  | || |||||||||||   ||
gttggcttactaatcttcgag--tcatcatcatttctagaacctttttctaactattaccttattattcttg-cagCAATGTGTATCCCTGGTGCTCTCACTGATCAGTAGCAGCATGGATGCTTGGCGCACTCGGCAATATGATTACTACCAGAGAGTATTGAATGGAATTTTAT

upper sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: GLYMA05G32460.1 (Glycine max), 3'ss of exon 15
------------gtga-gttatcctagaactttgcaaactttgtttcgttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT
             | | |||| |     |  |  ||||  ||  |  ||     |  |     |  | |  || || ||||||||||||||||||||||||  | || ||||| ||||||||| | ||||||||| | || |||||||||||||| |||||  | ||||||||||||||   ||
gtttcaatattaataatgttacctatttaactgtcaaatgtttctgggtgtgattgttaagagtgttataattctttttggcagCAATGTGTCTCCTTGGTGCTTTCACTCATTAGCAGTAGCCTGGATGCTTGGAGGACGCGGCAGTATGATTATTATCAGAGGGTTTTGAATGGAATATTAT

upper sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: GLYMA08G16620.1 (Glycine max), 3'ss of exon 17
------------gtga-gttatcc-tagaact-ttgcaaactttgtttcgttcttctcatg-gtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT
             | | |||| |  |  |||| |  ||   |||     ||  || | | | ||   | ||    | || ||||||||||||||||||||||||  | || ||||| ||||| ||| | ||||||||| | || |||||||||||||| |||||  | ||||||||||||||   ||
gtttcaatattaataatgttacctatttaactgtcacatgtttttaggtgtgatttttaagagtgagtgttataatttttttggcagCAATGTGTCTCCTTGGTGCTTTCACTCATTAGCAGCAGCCTGGATGCTTGGAGGACACGGCAGTATGATTATTATCAGAGGGTTTTGAATGGAATATTAT

upper sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 16
-----gtgagttatcctaga-actttgcaaactttg-tttcgttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT
        | | ||  |||  ||| |   |||| |  |||  ||   ||  | |      ||| ||  |||||||||||||||||| || |||||  | || ||||| ||||||||| | ||||| ||||| || |||||||||||||| || ||  | ||||||||||| ||    |
gtttcaatactaatattagttactctcttaactgtaattttttttgcctgtttgctacatttttttctttcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT

upper sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: GLYMA06G15820.1 (Glycine max), 3'ss of exon 16
-----gtgagttatcctaga-actttgcaaactttgtttcgttcttctca---tggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT
        | | ||  |||  ||| |   |||| | |||  || |   |    || |   | ||| ||   ||||||||||||||||| || |||||  | || ||||| ||||||||| | ||||| ||||| || |||||||||||||| || ||  | |||||||| || ||    |
gtttcaatactaatattagttactctcttaactgtatttttttttcgcctgtttgctacattttttttctctcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAACGGGATATTGT

upper sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
----------------gtgagttatcctagaactttgcaaactttgtttcg---ttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT
                 | | | ||  ||| | || || ||  |  ||| |   |  |  |||| | |  | ||| ||  ||  | |||||||||||| || |||||  | || || |||||||| ||||||||||| ||||| || |||||||||||||| |||||  | ||||| ||||| |||   |
gtttgattttaattttatca-tcattttagta-ttagctaatatatttttgagatgatggtcattgacagtatttcttgatttctagcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgcaaactttgtttcgttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT
                               tctttctttgtttgtt  CT-rich tract
      aaacttt  TA-rich tract