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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatctatttaatttgtaattgtcttgtaaacagcctcttgctacagTTACGGAAAGAAGGACGAAGAAATGAATACGAAATGCACAAATTACGGGCACTGCATCAGCATCAAAAAATG

Basic information

species Selaginella moellendorffii
transcript EFJ26093
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169080205|gb|FE490431.1|FE490431
EST:     CTGAGCAGTTCCGGTTGTGGAAGGCTGCTCGTGAGAAAGAACTGTTGCAG                         TTACGGAAAGAAGGACGAAGAAATGAATACGAAATGCACAAATTACGGGCA
genomic: CTGAGCAGTTCCGGTTGTGGAAGGCTGCTCGTGAGAAAGAACTGTTGCAGgtaacatcta ... cttgctacagTTACGGAAAGAAGGACGAAGAAATGAATACGAAATGCACAAATTACGGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacatctatttaatttgtaattgtcttgtaaacagcctcttgctacagTTACGGAAAGAAGGACGAAGAAATGAATACGAAATGCACAAATTACGGGCACTGCATCAGCATCAAAAAATG
              atttaat  putative branch site (score: 4)
                                          cctcttgct  putative PPT
      taacatctatttaatt  TA-rich tract