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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggaaaatcgttctttcttttttatttctcattttgctttactagGTTGCAAGCTTAGTTGCAGAGCTTGTAGACACAAAACTTGGAAAACAAGTTGTGAAAAGCCATGACACTTTGACATTCATTGGAACAAGCGAGTTAATAG

Basic information

species Selaginella moellendorffii
transcript EFJ17147
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169057015|gb|FE466242.1|FE466242
EST:     TCTACGCACTTCTGCTCGCAGAATCTGTTTGCATCCATTTAAAAGTCAAG                         GTTGCAAGCTTAGTTGCAGAGCTTGTAGACACAAAACTTGGAAAACAAGT
genomic: TCTACGCACTTCTGCTCGCAGAATCTGTTTGCATCCATTTAA--GTCA-Ggtggaaaatc ... gctttactagGTTGCAAGCTTAGTTGCAGAGCTTGTAGACACAAAACTTGGAAAACAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggaaaatcgttctttcttttttatttctcattttgctttactagGTTGCAAGCTTAGTTGCAGAGCTTGTAGACACAAAACTTGGAAAACAAGTTGTGAAAAGCCATGACACTTTGACATTCATTGGAACAAGCGAGTTAATAG
                         tcgttctttctttttt  CT-rich tract
                       tttcttttttatttct  TA-rich tract