1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaacaatcccgacttccggcgactttgggaagcctcctgacacgtttttcttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCTCGCCTGGGG
species | Selaginella moellendorffii |
transcript | EFJ12515 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAG TTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCTEST: gi|169055647|gb|FE465291.1|FE465291
genomic: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAGgtaacaatcc ... ttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCT
EST: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAG TTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCTEST: gi|169083434|gb|FE494819.1|FE494819
genomic: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAGgtaacaatcc ... ttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCT
EST: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAG TTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCTEST: gi|169077635|gb|FE484897.1|FE484897
genomic: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAGgtaacaatcc ... ttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCT
EST: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAG TTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCTEST: gi|169071916|gb|FE477644.1|FE477644
genomic: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAGgtaacaatcc ... ttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCT
EST: CAAATCACCGCATCGTATCTTCGTCTGTGGGCATTGAG TTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCTEST: gi|169079672|gb|FE486336.1|FE486336
genomic: CAAA-CACCGCATCGTATCTTCGTCTGTGGGCATTGAGgtaacaatcc ... ttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCT
EST: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAG TTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCT
genomic: TTGGGGGCTGTCTCAAACACCGCATCGTATCTTCGTCTGTGGGCATTGAGgtaacaatcc ... ttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCT
atcccgacttccggcgactttgggaagcctcctgacacgtttttcttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCTCGCCTGGGG
tcctgac putative branch site (score: 19)
cgtttttcttcgtt CT-rich tract
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaatcccgacttccggcgactttgggaagcctcctgacacgtttttcttcgttgcagTTTGGCCCATGCAGAACTTTCGGCCGTGTTTTACGAGAAAGTGTTGCTGCTCGCCTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT