1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtttgccagtgctttctgagttttgaacatacagcattttgctttctaaattgactttttccctgcagACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTCTTTCTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAG
species | Selaginella moellendorffii |
transcript | EFJ07343 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAG ACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTCEST: gi|169113823|gb|FE515371.1|FE515371
genomic: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAGgtttgccagt ... ttccctgcagACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTC
EST: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAG ACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTCEST: gi|169046223|gb|FE456382.1|FE456382
genomic: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAGgtttgccagt ... ttccctgcagACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTC
EST: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAG ACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTCEST: gi|169033081|gb|FE441413.1|FE441413
genomic: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAGgtttgccagt ... ttccctgcagACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTC
EST: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAG ACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTCEST: gi|169024981|gb|FE433814.1|FE433814
genomic: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAGgtttgccagt ... ttccctgcagACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTC
EST: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAG ACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTC
genomic: TTGGATTGATGGACCATCCGTTCCTCCCGACACTATATGCTTCTTTTCAGgtttgccagt ... ttccctgcagACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTC
ttctgagttttgaacatacagcattttgctttctaaattgactttttccctgcagACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTCTTTCTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAG
ttgactttttccct CT-rich tract
taaattgacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgccagtgctttctgagttttgaacatacagcattttgctttctaaattgactttttccctgcagACTGCGACTCACGTTTGCTTAGTGACAGACTTTTGTCCTGGAGGGGAACTCTTTCTTCAGATGGAGAAACAACCACTAAAATGTTTTGCAGAAGAAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT