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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatttttatgctgtagctttctaaattttttggatgtgtgtcatttctgacattgttaatatttctattttcaaatattcagATTGGAGAACGAACACCTCAACAATGTTGGCAGATACAGGGCAGTGAGAGCGGTGCCATTGCCCTTCAAACAAATGGATGACACTTTAGCTTAA

Basic information

species Selaginella moellendorffii
transcript EFJ06016
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169108653|gb|FE510491.1|FE510491
EST:     TTTTTTGCAGCGCTTGAGGTGATCCGACGAGGGCATTGGAATTTCTACAG                         ATTGGAGAACGAACACCTCAACAATGTTGGCAGATACAGGGCAGTGAGAGC
genomic: TTTTTTGCAGCGCTTGAGGTGATCCGACGAGGGCATTGGAATTTCTACAGgtgagaattt ... aaatattcagATTGGAGAACGAACACCTCAACAATGTTGGCAGATACAGGGCAGTGAGAGC
EST: gi|169108654|gb|FE510492.1|FE510492
EST:     TTTTTTGCAGCGCTTGAGGTGATCCGACGAGGGCATTGGAATTTCTACAG                         ATTGGAGAACGAACACCTCAACAATGTTGGCAGATACAGGGCAGTGAGAGC
genomic: TTTTTTGCAGCGCTTGAGGTGATCCGACGAGGGCATTGGAATTTCTACAGgtgagaattt ... aaatattcagATTGGAGAACGAACACCTCAACAATGTTGGCAGATACAGGGCAGTGAGAGC
EST: gi|169093179|gb|FE491820.1|FE491820
EST:     TTTTTTGCAGCGCTTGAGGTGATCCGACGAGGGCATTGGAATTTCTACAG                         ATTGGAGAACGAACACCTCAACAATGTTGGCAGATACAGGGCAGTGAGAGC
genomic: TTTTTTGCAGCGCTTGAGGTGATCCGACGAGGGCATTGGAATTTCTACAGgtgagaattt ... aaatattcagATTGGAGAACGAACACCTCAACAATGTTGGCAGATACAGGGCAGTGAGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggatgtgtgtcatttctgacattgttaatatttctattttcaaatattcagATTGGAGAACGAACACCTCAACAATGTTGGCAGATACAGGGCAGTGAGAGCGGTGCCATTGCCCTTCAAACAAATGGATGACACTTTAGCTTAA
                      acattgttaatatttc  TA-rich tract