1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagtacttaattgttgcgtgaaagttcctctcctcattccctgcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCACGCAAGGAAAACTGAGCGCACCGAAGATCCTAAGAATACAGAAG
species | Selaginella moellendorffii |
transcript | EFJ37688 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAA GTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCACEST: gi|169099049|gb|FE501770.1|FE501770
genomic: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAAgtaagtactt ... gcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCAC
EST: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAA GTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCACEST: gi|169051123|gb|FE460230.1|FE460230
genomic: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAAgtaagtactt ... gcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCAC
EST: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAA GTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCACEST: gi|169024931|gb|FE433387.1|FE433387
genomic: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAAgtaagtactt ... gcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCAC
EST: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAA GTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCACEST: gi|169026684|gb|FE433970.1|FE433970
genomic: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAAgtaagtactt ... gcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCAC
EST: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAA GTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCACEST: gi|169087202|gb|FE493110.1|FE493110
genomic: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAAgtaagtactt ... gcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCAC
EST: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAA GTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCAC
genomic: TGCATCGACTGTGTAGCACACGCACAAATCCCTCCTCGTGAGCAGTCCAAgtaagtactt ... gcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCAC
gtaagtacttaattgttgcgtgaaagttcctctcctcattccctgcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCACGCAAGGAAAACTGAGCGCACCGAAGATCCTAAGAATACAGAAG
acttaat putative branch site (score: 21)
ttcctctcctcattcc putative PPT
tacttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacttaattgttgcgtgaaagttcctctcctcattccctgcaatcgcagGTGTAGCTTCTTTCTACATCCATACGAAGGAACTGCTCTGCAAGTTCTCACGCAAGGAAAACTGAGCGCACCGAAGATCCTAAGAATACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA