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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttttacaaatatgcccacgccggttagagctaactcgtgatcttgttacttccagCATTGGGAAAGCATTCAACAGGCGCATGACGTTCCATTCGGTTCCTCGTTCGAG

Basic information

species Selaginella moellendorffii
transcript EFJ35409
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169112402|gb|FE512731.1|FE512731
EST:     AGAAACTACTG                         CATTGGGAAAGCATTCAACAGGCGCATGACGTTCCATTCGGTTCCTCGTTC
genomic: AGAAACTACTGgtgcttttac ... ttacttccagCATTGGGAAAGCATTCAACAGGCGCATGACGTTCCATTCGGTTCCTCGTTC
EST: gi|169030160|gb|FE439235.1|FE439235
EST:     CAATGACTGACACACAGCACATCTTCTTTTCGGGCGAGAAGAAACTACTG                         CATTGGGAAAGCATTCAACAGGCGCATGACGTTCCATTCGGTTCCTCGTTC
genomic: CAATGACTGACACACAGCACATCTTCTTTTCGGGCGAGAAGAAACTACTGgtgcttttac ... ttacttccagCATTGGGAAAGCATTCAACAGGCGCATGACGTTCCATTCGGTTCCTCGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttacaaatatgcccacgccggttagagctaactcgtgatcttgttacttccagCATTGGGAAAGCATTCAACAGGCGCATGACGTTCCATTCGGTTCCTCGTTCGAG
                           agctaac  putative branch site (score: 2)
                                             ttacttcc  putative PPT
      aaatat  TA-rich tract