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gtaagtattcttcagtgtgaagactccactcctgacttggtgatctatcaagGTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAAAATCTAGGATGTGCTCTTGCGTATAATCTTATCGCAGTGCCTGTCGCCG
species | Selaginella moellendorffii |
transcript | EFJ35201 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CGGCAATCGCTTGTCGCAA GTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAAEST: gi|169045399|gb|FE452256.1|FE452256
genomic: CGGCAATCGCTTGTCGCAAgtaagtattc ... atctatcaagGTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAA
EST: CCGCCTCGGATGCAGCCTCTGTCATATTGCTCGGCAATCGCTTGTCGCAA GTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAAEST: gi|169029998|gb|FE439177.1|FE439177
genomic: CCGCCTCGGATGCAGCCTCTGTCATATTGCTCGGCAATCGCTTGTCGCAAgtaagtattc ... atctatcaagGTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAA
EST: CCGCCTCGGATGCAGCCTCCGTCATATTGCTCGGCAATCGCTTGTCGCAA GTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAA
genomic: CCGCCTCGGATGCAGCCTCTGTCATATTGCTCGGCAATCGCTTGTCGCAAgtaagtattc ... atctatcaagGTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAA
gtaagtattcttcagtgtgaagactccactcctgacttggtgatctatcaagGTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAAAATCTAGGATGTGCTCTTGCGTATAATCTTATCGCAGTGCCTGTCGCCG
tcctgac putative branch site (score: 17)
aagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattcttcagtgtgaagactccactcctgacttggtgatctatcaagGTCCTGGACGCTTTAAGCTTGAGCAAGGCGACCATGAGCAAAGTGTACCAAAATCTAGGATGTGCTCTTGCGTATAATCTTATCGCAGTGCCTGTCGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG