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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgatcgtttacatcctctgtcactcgatctatctctcaaatctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCCAGGGCCACATCAAAGCGCTTAGAGAGGAGGTGGAAGACTATGCAAAAGA

Basic information

species Selaginella moellendorffii
transcript EFJ32604
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169041586|gb|FE449547.1|FE449547
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169030970|gb|FE440331.1|FE440331
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169097027|gb|FE498418.1|FE498418
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169087280|gb|FE491693.1|FE491693
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169035180|gb|FE442571.1|FE442571
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169019624|gb|FE427973.1|FE427973
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169062066|gb|FE469151.1|FE469151
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169044082|gb|FE451668.1|FE451668
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169070247|gb|FE478068.1|FE478068
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTANAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169062626|gb|FE470296.1|FE470296
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169026368|gb|FE433459.1|FE433459
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169102881|gb|FE505246.1|FE505246
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169082302|gb|FE488045.1|FE488045
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169067937|gb|FE474782.1|FE474782
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169046861|gb|FE455057.1|FE455057
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169036058|gb|FE446764.1|FE446764
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169036891|gb|FE443851.1|FE443851
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169080653|gb|FE487174.1|FE487174
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169088705|gb|FE491539.1|FE491539
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169067649|gb|FE475833.1|FE475833
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169113159|gb|FE514405.1|FE514405
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169077298|gb|FE485600.1|FE485600
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169030299|gb|FE440024.1|FE440024
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169025096|gb|FE434696.1|FE434696
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169114785|gb|FE516046.1|FE516046
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169087153|gb|FE493100.1|FE493100
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169075644|gb|FE482030.1|FE482030
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169070246|gb|FE478067.1|FE478067
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169035575|gb|FE445345.1|FE445345
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169075798|gb|FE482795.1|FE482795
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169087446|gb|FE492223.1|FE492223
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169061497|gb|FE469596.1|FE469596
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169101299|gb|FE501987.1|FE501987
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169019269|gb|FE428182.1|FE428182
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169052582|gb|FE460921.1|FE460921
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169112011|gb|FE510689.1|FE510689
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169113160|gb|FE514406.1|FE514406
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCANAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAAACCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169069491|gb|FE479535.1|FE479535
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169087332|gb|FE491745.1|FE491745
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169047242|gb|FE456491.1|FE456491
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169051133|gb|FE458680.1|FE458680
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169048577|gb|FE454446.1|FE454446
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169074935|gb|FE483817.1|FE483817
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169096115|gb|FE500275.1|FE500275
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169088634|gb|FE491520.1|FE491520
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169114933|gb|FE515882.1|FE515882
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169094799|gb|FE492950.1|FE492950
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169112012|gb|FE510690.1|FE510690
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169094384|gb|FE495584.1|FE495584
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169019686|gb|FE427489.1|FE427489
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTANAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169023492|gb|FE431403.1|FE431403
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169115017|gb|FE516382.1|FE516382
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
EST: gi|169067635|gb|FE475832.1|FE475832
EST:     GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAG                         GCTCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC
genomic: GTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 32

GCTTTGACATCAAGAGGATTCACCGAGGTGGACTTTGAGAAAGTTGCCGAGTTTTTCGACCGTGCGGTGGGAATTGCCGTAAAGATCAAAGAAGCCTCAGgtatgttgat ... ctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCCAGGGCCACATCAAAGCGCTTAGAGAGGAGGTGGAAGACTATGCAAAAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgatcgtttacatcctctgtcactcgatctatctctcaaatctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCCAGGGCCACATCAAAGCGCTTAGAGAGGAGGTGGAAGACTATGCAAAAGA
 tgttgat  putative branch site (score: 32)
                                            tctttcatc  putative PPT
                                         aaatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttgatcgtttacatcctctgtcactcgatctatctctcaaatctttcatcagGCGCCAAGCTTAAGGATTTCAAGGCTGCCGTTGACACGAACCCCGAATTCCAGGGCCACATCAAAGCGCTTAGAGAGGAGGTGGAAGACTATGCAAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA