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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgatttttcttttcgtgtgtctctaaataagctgcctgttaccggttgtcgcttctcagGATTGGCCAGAAGTCACGAAATACGCAGGTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATTTGTATAAAACATGGGTTGATCCTCAGA

Basic information

species Selaginella moellendorffii
transcript EFJ19863
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ19863 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: GLYMA02G00510.1 (Glycine max), 3'ss of exon 14
------------------------------------------------gtacgatttttcttttcgtgtgtctctaaataagctgcctgttaccggttgtcgcttctcagGATTGGCCAGAAGTCACGAAATACGCAGGTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATTTGTATAAAACATGGGTTGATCCTCAGA
                                                    |  ||||  |  |   | ||| |     |  |||    ||  |||||| || ||||| || ||||| ||||| |||||||| || ||| ||||||| ||||||||||| ||||| ||  | || ||||||||||| ||||  |               
gtacacttatgatccatttgtcttgattttttaatattgcaatggttcacgagggttttggtagctgatatctattgtgcaattgcaatctatagGTTGTAGCATCTCAAGACTGGCCTGAAGTGACGAAATATGCCGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTCATACAAGATTTGTACAAAATGT---------------

upper sequence: EFJ19863 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 3'ss of exon 14
--------------------------------gta-cgatttttcttttcgtgtgtctctaaataagctgcctgttaccggttgtcgcttctcagGATTGGCCAGAAGTCACGAAATACGCAGGTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATTTGTATAAAACATGGGTTGATCCTCAGA
                                | | |||  ||  || |  |  || | |   |    ||  |  |   |||||| |||||||| || ||||| ||||| || ||||| || ||| |||| || |||||||||||||| |||||  | || |||||||||||||||||||               
gtaaggattatacacttttatcaagtagtggagcatcgaaattcattatactcagtttttttctt--ttgttttctttagGTTGTTGCTTCTCAAGACTGGCCTGAAGTGACAAAATATGCGGGTTTAGTTTGTGCTCAAGCTCACAGGCAAGAACTTATACAAGATTTGTATAAAACAT---------------

upper sequence: EFJ19863 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 12
--------------------------------------------------gtacgatttttcttttcgtgtgtctctaaataa--gctgcct--gttaccggttgtcgcttctcagGATTGGCCAGAAGTCACGAAATACGCAGGTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATTTGTATAAAACATGGGTTGATCCTCAGA
                                                      | || ||       | |||  || |   |  | ||  |   ||   ||| || ||||||||||| ||||| |||||||| ||||| |||||  | || || ||||| ||||||||||| ||  |||| |||||||| || || ||||               
gtaaaatttctttaactgatatcatgcttcctagaaccttgtttttcctaaagtggttattgaggaactttgttgctgatagattgttgtattaattgtagGTAGTAGCTTCTCAGGACTGGCCTGAAGTCACAAAATATGCAGGATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACAT---------------

upper sequence: EFJ19863 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: PP1S173_134V6.1 (Physcomitrella patens), 3'ss of exon 13
-------------------------------------------------------------------------------------gtacgatttttcttttcgtgtgtctctaaataagctgcctgttaccggttgtcgcttctcagGATTGGCCAGAAGTCACGAAATACGCAGGTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATTTGTATAAAACATGGGTTGATCCTCAGA
                                                                                      || |||  |  | |     |   |  |  |  ||      || | |||||| || || ||||||||||| || ||||| || ||||| ||| |||||||||||||| ||||| | |||||||||||    ||  | |  |||  ||               
gtaagtcttccttacctttgttagtgctattttgtttgaacgagacatggttcaaatcaataacgagtttccatgtcacagtttaatatgatactattatcttctttggttgacttccgcatttgtttgcagGTTGTGGCATCGCAGGATTGGCCTGAGGTCACCAAGTACGCTGGTTTAGTGTGCGCTCAAACTCACCGTCAAGAGTTGATTGCGGACCTATTCAAAGAAT---------------

upper sequence: EFJ19863 (Selaginella moellendorffii), 3'ss of exon 14
lower sequence: PP1S7_194V6.1 (Physcomitrella patens), 3'ss of exon 12
------------------------------------------------------------------------------------------------------------------gtacgatttttcttttcgtgtgtctctaaataagctgcctgt-taccggttgtcgcttctcagGATTGGCCAGAAGTCACGAAATACGCAGGTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATTTGTATAAAACATGGGTTGATCCTCAGA
                                                                                                                   ||          |||| ||    |   | |  |  | || | | | ||| || ||||| ||||||||||| || ||||| ||||| || ||  | |||||||||||||||||| | || |||||||| || ||| |||| |||   |               
gtaagttactgtaaccaagcgattgcccccacttattaatagctgataagctatatgtatttaggtctcaattgagaagtgtcgcccttgattttgaattctcttaacgtgtacatagtgcgcacgatttcctggcgatgacattttgtcgtctatatgcagGTGGTAGCTTCGCAGGATTGGCCTGAGGTCACTAAATATGCCGGATTGGTGTGCGCTCAAGCTCACCGTCAGGAGTTGATTCAGGATCTGTACAAAGAGT---------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttttcgtgtgtctctaaataagctgcctgttaccggttgtcgcttctcagGATTGGCCAGAAGTCACGAAATACGCAGGTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATTTGTATAAAACATGGGTTGATCCTCAGA
                ctctaaa  putative branch site (score: 3)
                                            tcgcttctc  putative PPT
                 tctaaataa  TA-rich tract