1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtgagcttctcttgcttttctatagttactatactaatcttgctggataaataaacagCTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAATATGCTTGTCGGTCAAGCAATTCCAAACAGCTACATTCCTTCAATCGAA
species | Selaginella moellendorffii |
transcript | EFJ18610 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTACACAAGAAGCAAAGTGGTGGCCAGGGTCAATACGGTCGCGTGGAAGG CTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAAEST: gi|169040304|gb|FE450241.1|FE450241
genomic: TTACACAAGAAGCAAAGTGGTGGCCAGGGTCAATACGGTCGCGTGGAAGGgtgagcttct ... aaataaacagCTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAA
EST: TTACACAAGAAGCAAAGTGGTGGCCAGGGTCAATACGGTCGCGTGGAAGG CTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAAEST: gi|169098404|gb|FE497758.1|FE497758
genomic: TTACACAAGAAGCAAAGTGGTGGCCAGGGTCAATACGGTCGCGTGGAAGGgtgagcttct ... aaataaacagCTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAA
EST: TTACACAAGAAGCAAAGTGGTGGCCAGGGTCAATACGGTCGCGTGGAAGG CTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAA
genomic: TTACACAAGAAGCAAAGTGGTGGCCAGGGTCAATACGGTCGCGTGGAAGGgtgagcttct ... aaataaacagCTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAA
agcttctcttgcttttctatagttactatactaatcttgctggataaataaacagCTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAATATGCTTGTCGGTCAAGCAATTCCAAACAGCTACATTCCTTCAATCGAA
tactaat putative branch site (score: 5)
ataaataaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttctcttgcttttctatagttactatactaatcttgctggataaataaacagCTACATTGAACCGCTTCCAGAGGATTCCGAAGTCAAGTTTGAGTTTAAAAATATGCTTGTCGGTCAAGCAATTCCAAACAGCTACATTCCTTCAATCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA